Variant report

Variant	rs146578111
Chromosome Location	chr2:115921122-115921123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:115921056-115921504	H1-neurons	neurons:	n/a	n/a
2	RAD21	chr2:115921114-115921556	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
DPP10-AS1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115918000-115921200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr2:115918200-115921200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr2:115919800-115921200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:115920000-115921200	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr2:115920000-115921200	Bivalent/Poised TSS	Fetal Kidney	kidney
6	chr2:115920200-115921200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
7	chr2:115920200-115921600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:115920400-115921800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:115920600-115921200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr2:115920600-115921600	Active TSS	Brain Angular Gyrus	brain
11	chr2:115920600-115921600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr2:115920600-115921600	Bivalent/Poised TSS	Fetal Brain Male	brain
13	chr2:115920800-115921200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr2:115920800-115921200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr2:115920800-115921200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
16	chr2:115920800-115921200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr2:115920800-115921200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr2:115920800-115921200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
19	chr2:115920800-115921400	Active TSS	Brain Hippocampus Middle	brain
20	chr2:115920800-115921400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr2:115920800-115921400	Bivalent Enhancer	Fetal Stomach	stomach
22	chr2:115921000-115921200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
23	chr2:115921000-115921200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:115921000-115921400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
25	chr2:115921000-115921400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
26	chr2:115921000-115921600	Bivalent Enhancer	Fetal Intestine Large	intestine

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