Variant report

Variant	rs1466004
Chromosome Location	chr13:63086834-63086835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:63086495..63088019-chr13:63090146..63093934,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17240477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17240539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17242109	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17299862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1929178	1.00[CHB][hapmap]
rs4884426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190262	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73190263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73190264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73190272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63083200-63087000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:63084400-63087000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:63085000-63087000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr13:63085400-63087000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:63086000-63087200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:63086000-63087200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:63086000-63087200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:63086000-63087200	Flanking Active TSS	Dnd41	blood
9	chr13:63086600-63087000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr13:63086600-63087000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:63086600-63087000	Enhancers	Brain Hippocampus Middle	brain
12	chr13:63086600-63087000	Active TSS	Brain Substantia Nigra	brain
13	chr13:63086600-63087000	Flanking Active TSS	GM12878-XiMat	blood
14	chr13:63086600-63087200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr13:63086600-63087200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:63086600-63087200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:63086600-63087200	Enhancers	Fetal Muscle Trunk	muscle
18	chr13:63086600-63087200	Enhancers	Pancreas	Pancrea
19	chr13:63086800-63087000	Genic enhancers	H9 Cell Line	embryonic stem cell
20	chr13:63086800-63087000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr13:63086800-63088200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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