Variant report
| Variant | rs146601183 |
|---|---|
| Chromosome Location | chr9:105015627-105015628 |
| allele | -/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:12)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr9:105015506-105015634 | MCF-7 | breast: | n/a | chr9:105015565-105015573 |
| 2 | RAD21 | chr9:105015391-105015850 | MCF-7 | breast: | n/a | n/a |
| 3 | RAD21 | chr9:105015309-105015818 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | RAD21 | chr9:105015416-105015812 | MCF-7 | breast: | n/a | n/a |
| 5 | CTCF | chr9:105015420-105015729 | H1-hESC | embryonic stem cell: | n/a | chr9:105015565-105015573 |
| 6 | RAD21 | chr9:105015380-105015745 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 7 | RAD21 | chr9:105015362-105015764 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | CTCF | chr9:105015560-105015710 | WERI-Rb-1 | eye: | n/a | chr9:105015565-105015573 |
| 9 | CTCF | chr9:105015517-105015635 | MCF-7 | breast: | n/a | chr9:105015565-105015573 |
| 10 | CTCF | chr9:105015540-105015690 | WERI-Rb-1 | eye: | n/a | chr9:105015565-105015573 |
| 11 | RAD21 | chr9:105015421-105015716 | GM12878 | blood: | n/a | n/a |
| 12 | CTCF | chr9:105015408-105015699 | H1-hESC | embryonic stem cell: | n/a | chr9:105015565-105015573 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-329P | TF binding region |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048227 | chr9:104546761-105162810 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1052675 | chr9:104868071-105042725 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv893642 | chr9:104904454-105158032 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1038241 | chr9:104943675-105046156 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv893645 | chr9:104992089-105046926 | Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv893646 | chr9:104993672-105046926 | Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv831675 | chr9:105013834-105184661 | Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
