Variant report

Variant	rs1466037
Chromosome Location	chr11:36362448-36362449
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1005985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501150	1.00[CEU][hapmap]
rs12293053	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1374377	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1446670	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562324	0.80[YRI][hapmap]
rs17742101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs1975541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7943002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36360800-36364000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36361000-36365000	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:36361000-36365000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:36361200-36362600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:36361200-36362600	Enhancers	Fetal Thymus	thymus
6	chr11:36361200-36362800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:36361200-36365200	Enhancers	Brain Substantia Nigra	brain
8	chr11:36361400-36362600	Enhancers	Fetal Kidney	kidney
9	chr11:36361400-36362800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:36361400-36363000	Enhancers	Brain Hippocampus Middle	brain
11	chr11:36361400-36363800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:36361400-36365400	Enhancers	Fetal Intestine Small	intestine
13	chr11:36361600-36362800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:36361600-36362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:36361600-36363800	Weak transcription	Spleen	Spleen
16	chr11:36361800-36362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:36361800-36364200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:36362000-36362600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:36362000-36362800	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:36362000-36363200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:36362200-36363600	Weak transcription	Fetal Intestine Large	intestine
22	chr11:36362400-36362600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr11:36362400-36363600	Weak transcription	Brain Angular Gyrus	brain

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