Variant report

Variant	rs146635444
Chromosome Location	chr13:96331969-96331970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:96331069-96332293	GM12878	blood:	n/a	n/a
2	STAT3	chr13:96331868-96332101	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96327839..96330034-chr13:96330873..96332549,2	MCF-7	breast:

Variant related genes	Relation type
DNAJC3-AS1	TF binding region
ENSG00000247400	Chromatin interaction
ENSG00000102580	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96325600-96332400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:96328000-96332000	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr13:96329600-96332400	Active TSS	Right Atrium	heart
4	chr13:96330200-96332000	Flanking Active TSS	Dnd41	blood
5	chr13:96330200-96333200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr13:96330200-96340800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:96330400-96332200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:96330600-96332000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr13:96330600-96332000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr13:96330600-96332400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr13:96330600-96336400	Weak transcription	Gastric	stomach
12	chr13:96330600-96336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:96330600-96340800	Weak transcription	Spleen	Spleen
14	chr13:96330800-96332000	Enhancers	Brain Anterior Caudate	brain
15	chr13:96330800-96332400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr13:96330800-96332400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr13:96330800-96333600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr13:96330800-96333800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr13:96330800-96334400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr13:96330800-96334400	Weak transcription	Fetal Brain Female	brain
21	chr13:96330800-96336000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr13:96330800-96336800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr13:96330800-96337000	Weak transcription	Lung	lung
24	chr13:96331000-96333400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr13:96331000-96336400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr13:96331000-96336400	Weak transcription	Fetal Stomach	stomach
27	chr13:96331200-96332000	Enhancers	Brain Angular Gyrus	brain
28	chr13:96331200-96332000	Enhancers	Brain Cingulate Gyrus	brain
29	chr13:96331200-96332000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr13:96331200-96332200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr13:96331200-96332200	Weak transcription	Colonic Mucosa	Colon
32	chr13:96331200-96332400	Enhancers	Fetal Heart	heart
33	chr13:96331200-96332600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr13:96331200-96332600	Enhancers	Fetal Intestine Large	intestine
35	chr13:96331200-96332600	Enhancers	Fetal Lung	lung
36	chr13:96331200-96333000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr13:96331200-96333000	Enhancers	Liver	Liver
38	chr13:96331200-96333200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr13:96331200-96335000	Weak transcription	Fetal Muscle Leg	muscle
40	chr13:96331200-96336400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr13:96331200-96336800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr13:96331200-96336800	Weak transcription	Fetal Intestine Small	intestine
43	chr13:96331200-96336800	Weak transcription	Placenta	Placenta
44	chr13:96331200-96337000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr13:96331200-96339400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr13:96331400-96332000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr13:96331400-96332000	Enhancers	Stomach Smooth Muscle	stomach
48	chr13:96331400-96332000	Enhancers	NH-A	brain
49	chr13:96331400-96332200	Enhancers	Duodenum Mucosa	Duodenum
50	chr13:96331400-96332200	Enhancers	Skeletal Muscle Female	skeletal muscle

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