Variant report

Variant	rs146643800
Chromosome Location	chr14:79163945-79163946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:79163722-79164105	K562	blood:	n/a	chr14:79163887-79163908
2	CTCF	chr14:79163880-79164030	HL-60	blood:	n/a	chr14:79163887-79163908
3	CTCF	chr14:79163781-79163957	A549	lung:	n/a	chr14:79163887-79163908
4	CTCF	chr14:79163800-79163950	GM12878	blood:	n/a	chr14:79163887-79163908
5	RAD21	chr14:79163647-79164087	HepG2	liver:	n/a	chr14:79163900-79163907
6	CTCF	chr14:79163820-79163970	HEEpiC	esophagus:	n/a	chr14:79163887-79163908
7	CTCF	chr14:79163800-79163950	HBMEC	blood vessel:	n/a	chr14:79163887-79163908
8	ZNF143	chr14:79163766-79164080	GM12878	blood:	n/a	n/a
9	TCF7L2	chr14:79163662-79163951	MCF-7	breast:	n/a	chr14:79163805-79163819 chr14:79163806-79163816 chr14:79163774-79163783 chr14:79163808-79163817 chr14:79163807-79163816 chr14:79163804-79163818 chr14:79163804-79163820 chr14:79163804-79163820
10	SMC3	chr14:79163721-79164068	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr14:79163768-79164026	GM12878	blood:	n/a	chr14:79163887-79163908
12	CTCF	chr14:79163820-79163970	HMF	breast:	n/a	chr14:79163887-79163908
13	CTCF	chr14:79163800-79163950	HepG2	liver:	n/a	chr14:79163887-79163908
14	CTCF	chr14:79163820-79163970	AG10803	skin:	n/a	chr14:79163887-79163908
15	CTCF	chr14:79163820-79163970	GM12865	blood:	n/a	chr14:79163887-79163908
16	CTCF	chr14:79163840-79163990	SAEC	small airway:	n/a	chr14:79163887-79163908
17	CTCF	chr14:79163820-79163970	HBMEC	blood vessel:	n/a	chr14:79163887-79163908
18	CTCF	chr14:79163840-79163990	HUVEC	blood vessel:	n/a	chr14:79163887-79163908
19	CTCF	chr14:79163754-79163986	HepG2	liver:	n/a	chr14:79163887-79163908
20	RAD21	chr14:79163724-79164083	HepG2	liver:	n/a	chr14:79163900-79163907
21	CTCF	chr14:79163790-79164024	Hela-S3	cervix:	n/a	chr14:79163887-79163908
22	FOS	chr14:79163632-79163962	MCF10A-Er-Src	breast:	n/a	chr14:79163772-79163784 chr14:79163774-79163783 chr14:79163775-79163782 chr14:79163773-79163782 chr14:79163773-79163783 chr14:79163773-79163783
23	CTCF	chr14:79163820-79163970	SAEC	small airway:	n/a	chr14:79163887-79163908
24	CTCF	chr14:79163820-79163970	GM06990	blood:	n/a	chr14:79163887-79163908
25	CTCF	chr14:79163820-79163970	HFF	foreskin:	n/a	chr14:79163887-79163908
26	RAD21	chr14:79163694-79164028	H1-hESC	embryonic stem cell:	n/a	chr14:79163900-79163907
27	CTCF	chr14:79163840-79163990	BJ	skin:	n/a	chr14:79163887-79163908
28	FOS	chr14:79163634-79163962	MCF10A-Er-Src	breast:	n/a	chr14:79163772-79163784 chr14:79163774-79163783 chr14:79163775-79163782 chr14:79163773-79163782 chr14:79163773-79163783 chr14:79163773-79163783
29	CTCF	chr14:79163840-79163990	GM12872	blood:	n/a	chr14:79163887-79163908
30	CTCF	chr14:79163800-79163950	HMEC	breast:	n/a	chr14:79163887-79163908
31	CTCF	chr14:79163800-79163950	BE2_C	brain:	n/a	chr14:79163887-79163908
32	CTCF	chr14:79163840-79163990	HCFaa	heart:	n/a	chr14:79163887-79163908
33	RAD21	chr14:79163659-79164066	A549	lung:	n/a	chr14:79163900-79163907
34	CTCF	chr14:79163860-79164010	GM12875	blood:	n/a	chr14:79163887-79163908
35	CTCF	chr14:79163840-79163990	AG09319	gingival:	n/a	chr14:79163887-79163908
36	SMC3	chr14:79163744-79164228	SK-N-SH	brain:	n/a	n/a
37	CTCF	chr14:79163840-79163990	GM12865	blood:	n/a	chr14:79163887-79163908
38	RAD21	chr14:79163672-79164155	MCF-7	breast:	n/a	chr14:79163900-79163907
39	CTCF	chr14:79163820-79163970	NHDF-neo	bronchial:	n/a	chr14:79163887-79163908
40	CTCF	chr14:79163820-79163970	WERI-Rb-1	eye:	n/a	chr14:79163887-79163908
41	CTCF	chr14:79163840-79163990	A549	lung:	n/a	chr14:79163887-79163908
42	CTCF	chr14:79163820-79163970	HA-sp	spinal cord:	n/a	chr14:79163887-79163908
43	CTCF	chr14:79163840-79163990	GM12878	blood:	n/a	chr14:79163887-79163908
44	CTCF	chr14:79163820-79163970	AG09319	gingival:	n/a	chr14:79163887-79163908
45	CTCF	chr14:79163800-79163950	GM12874	blood:	n/a	chr14:79163887-79163908
46	CTCF	chr14:79163820-79163970	GM12874	blood:	n/a	chr14:79163887-79163908
47	CTCF	chr14:79163880-79164030	K562	blood:	n/a	chr14:79163887-79163908
48	CTCF	chr14:79163825-79163999	HepG2	liver:	n/a	chr14:79163887-79163908
49	CTCF	chr14:79163860-79164010	BE2_C	brain:	n/a	chr14:79163887-79163908
50	CTCF	chr14:79163860-79164010	BJ	skin:	n/a	chr14:79163887-79163908

No.	Distal block	Cell Line	Cell type
1	chr14:78488036..78488630-chr14:79163630..79164376,2	K562	blood:
2	chr14:78630320..78630924-chr14:79163432..79164245,2	MCF-7	breast:
3	chr14:79064098..79065061-chr14:79163439..79164257,3	MCF-7	breast:
4	chr14:78914156..78915026-chr14:79163475..79164182,2	MCF-7	breast:

Variant related genes	Relation type
NRXN3	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv565236	chr14:79156377-79165596	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv565237	chr14:79157040-79165608	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3530261	chr14:79159000-79165796	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3530263	chr14:79159029-79165792	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3530262	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3530264	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv13449	chr14:79159520-79165627	Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv565238	chr14:79160430-79164498	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv565239	chr14:79160430-79165089	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv565240	chr14:79160430-79165596	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv565241	chr14:79160430-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	nsv565242	chr14:79160430-79166221	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	esv2421742	chr14:79160946-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv442348	chr14:79161185-79165607	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	nsv565243	chr14:79161542-79165608	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	nsv517018	chr14:79161622-79165217	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
19	nsv565244	chr14:79161622-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
20	nsv524797	chr14:79161622-79167881	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
21	nsv514753	chr14:79161727-79165327	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
22	nsv565245	chr14:79162573-79165217	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
23	nsv565246	chr14:79162967-79165608	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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