Variant report

Variant	rs146647416
Chromosome Location	chr5:112478921-112478922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112476798..112478381-chr5:112478430..112480202,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv599399	chr5:112477897-112479004	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599400	chr5:112477948-112479902	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112467400-112493200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:112470200-112491000	Weak transcription	Fetal Kidney	kidney
3	chr5:112470600-112482000	Weak transcription	Fetal Heart	heart
4	chr5:112474800-112482400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:112475600-112479200	Strong transcription	Liver	Liver
6	chr5:112475800-112479600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:112476200-112479400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:112476800-112479800	Weak transcription	Right Ventricle	heart
9	chr5:112477000-112483200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:112477200-112483200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:112477200-112485400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:112477400-112481400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:112477400-112482000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:112477400-112482400	Weak transcription	Adipose Nuclei	Adipose
15	chr5:112477400-112482600	Weak transcription	NHLF	lung
16	chr5:112477400-112486600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:112477400-112486600	Weak transcription	Right Atrium	heart
18	chr5:112477400-112489200	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:112477400-112500600	Weak transcription	Fetal Stomach	stomach
20	chr5:112477600-112481200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:112477600-112482600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:112477600-112482800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:112477600-112482800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:112477600-112483000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:112477800-112482400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:112478000-112482400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr5:112478000-112483000	Weak transcription	Left Ventricle	heart
28	chr5:112478000-112485600	Weak transcription	Pancreas	Pancrea
29	chr5:112478000-112497000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:112478200-112480600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:112478200-112480800	Weak transcription	Esophagus	oesophagus
32	chr5:112478200-112482400	Weak transcription	HSMMtube	muscle
33	chr5:112478400-112480800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:112478400-112482400	Weak transcription	NHDF-Ad	bronchial
35	chr5:112478400-112483000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr5:112478600-112480800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:112478600-112481600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:112478600-112481600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:112478600-112481600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:112478600-112481800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:112478600-112482000	Weak transcription	Osteobl	bone
42	chr5:112478600-112483000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr5:112478800-112479200	ZNF genes & repeats	Aorta	Aorta
44	chr5:112478800-112479400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr5:112478800-112480200	Weak transcription	Ovary	ovary
46	chr5:112478800-112480600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:112478800-112480600	Weak transcription	HMEC	breast
48	chr5:112478800-112480600	Weak transcription	NHEK	skin
49	chr5:112478800-112482000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr5:112478800-112483000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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