Variant report

Variant	rs146706616
Chromosome Location	chr11:74659406-74659407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:74659380-74662170	SK-N-SH	brain:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74659008..74661915-chr11:74699636..74702523,6	MCF-7	breast:
2	chr11:74654949..74658411-chr11:74658805..74662988,5	MCF-7	breast:
3	chr11:74459112..74461560-chr11:74659129..74661254,3	MCF-7	breast:
4	chr11:74656443..74658415-chr11:74658426..74661700,3	MCF-7	breast:
5	chr11:74659109..74661906-chr11:74698267..74701116,3	K562	blood:
6	chr11:74658436..74661013-chr11:74696774..74699429,2	MCF-7	breast:
7	chr11:74657727..74660130-chr11:74951983..74953797,2	K562	blood:
8	chr11:74658459..74662580-chr11:74698519..74701644,8	MCF-7	breast:
9	chr11:74647283..74650920-chr11:74658326..74663032,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265344	TF binding region
SPCS2	TF binding region
ENSG00000166435	Chromatin interaction
ENSG00000166439	Chromatin interaction
ENSG00000265344	Chromatin interaction
ENSG00000162139	Chromatin interaction
ENSG00000255136	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3478108	chr11:74659161-74659485	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74618000-74659600	Weak transcription	Esophagus	oesophagus
2	chr11:74620400-74659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:74628200-74659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:74632200-74659600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:74642000-74659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:74648000-74659600	Weak transcription	Pancreas	Pancrea
7	chr11:74648000-74659600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:74648000-74659600	Weak transcription	Spleen	Spleen
9	chr11:74648200-74659600	Weak transcription	Brain Germinal Matrix	brain
10	chr11:74648200-74659600	Weak transcription	Fetal Thymus	thymus
11	chr11:74648200-74659600	Weak transcription	Left Ventricle	heart
12	chr11:74648400-74659600	Weak transcription	Fetal Heart	heart
13	chr11:74648600-74659600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:74652000-74659600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:74652000-74659600	Weak transcription	Gastric	stomach
16	chr11:74652200-74659600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:74652200-74659600	Weak transcription	Ovary	ovary
18	chr11:74652800-74659600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:74652800-74659600	Weak transcription	Lung	lung
20	chr11:74654400-74659600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:74655200-74659600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:74655400-74659600	Weak transcription	HSMM	muscle
23	chr11:74655600-74659600	Weak transcription	Placenta	Placenta
24	chr11:74655800-74659600	Weak transcription	Aorta	Aorta
25	chr11:74656400-74659600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:74657400-74659600	Weak transcription	Stomach Mucosa	stomach
27	chr11:74658600-74661600	Active TSS	K562	blood
28	chr11:74658800-74661600	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr11:74659000-74659600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:74659000-74659600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:74659000-74659600	Enhancers	Brain Angular Gyrus	brain
32	chr11:74659000-74659800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:74659000-74660000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr11:74659000-74660000	Flanking Active TSS	Dnd41	blood
35	chr11:74659000-74661400	Active TSS	A549	lung
36	chr11:74659000-74661600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:74659000-74661800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:74659200-74659600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:74659200-74659600	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr11:74659200-74659600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:74659200-74659600	Active TSS	Stomach Smooth Muscle	stomach
42	chr11:74659200-74659600	Flanking Active TSS	GM12878-XiMat	blood
43	chr11:74659200-74659800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr11:74659200-74659800	Active TSS	HepG2	liver
45	chr11:74659200-74659800	Flanking Active TSS	Osteobl	bone
46	chr11:74659200-74660000	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr11:74659200-74660000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:74659200-74660000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr11:74659200-74660000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:74659200-74660200	Flanking Active TSS	Primary hematopoietic stem cells	blood

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