Variant report

Variant	rs146733852
Chromosome Location	chr15:78745428-78745429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78740565..78742425-chr15:78743943..78746196,2	MCF-7	breast:
2	chr15:78729183..78733288-chr15:78740820..78746070,7	K562	blood:
3	chr15:78742068..78744005-chr15:78744591..78747196,2	K562	blood:
4	chr15:78731552..78733950-chr15:78743733..78745911,2	MCF-7	breast:
5	chr15:78727207..78732074-chr15:78744204..78747986,5	MCF-7	breast:
6	chr15:78743131..78746223-chr15:78751883..78753767,3	K562	blood:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv1806890	chr15:78744695-78786064	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78731600-78756400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78731600-78760200	Weak transcription	Aorta	Aorta
3	chr15:78732200-78747600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:78732200-78799400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:78732800-78758600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:78734000-78747200	Weak transcription	Fetal Brain Male	brain
7	chr15:78738600-78747400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:78738800-78747400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:78739200-78745600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:78739200-78745600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:78739200-78747600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:78739200-78748400	Weak transcription	HSMM	muscle
13	chr15:78739200-78748800	Weak transcription	HUVEC	blood vessel
14	chr15:78739200-78749600	Weak transcription	HSMMtube	muscle
15	chr15:78739200-78755200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:78739400-78745600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:78739400-78747600	Weak transcription	NHDF-Ad	bronchial
18	chr15:78739400-78747800	Weak transcription	Osteobl	bone
19	chr15:78739600-78746800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:78739600-78755200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:78740000-78746600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:78740400-78753200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:78740600-78748800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:78740600-78756000	Weak transcription	Brain Germinal Matrix	brain
25	chr15:78740800-78748200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:78741000-78747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:78741200-78747000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:78741200-78747000	Weak transcription	Fetal Muscle Leg	muscle
29	chr15:78741200-78755400	Weak transcription	Fetal Stomach	stomach
30	chr15:78741200-78781800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:78741800-78745600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:78741800-78746600	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:78741800-78747400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:78742000-78745600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr15:78742000-78745600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr15:78742000-78747200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:78742000-78747200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:78742000-78747600	Weak transcription	Fetal Lung	lung
39	chr15:78742000-78749000	Weak transcription	NH-A	brain
40	chr15:78742000-78753000	Weak transcription	Dnd41	blood
41	chr15:78742000-78753400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:78742200-78747000	Weak transcription	Fetal Thymus	thymus
43	chr15:78742200-78748200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:78742400-78747200	Weak transcription	Fetal Heart	heart
45	chr15:78742400-78747400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:78742600-78745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:78742600-78750400	Weak transcription	HepG2	liver
48	chr15:78742800-78745600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:78742800-78746000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:78742800-78747400	Weak transcription	Stomach Smooth Muscle	stomach

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