The 2.0 version of rSNPBase

Variant report

Variant rs146743290
Chromosome Location chr1:172420711-172420712
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172413600-172421800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr1:172413600-172421800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:172417200-172421800 Weak transcription Psoas Muscle Psoas
4 chr1:172417200-172423200 Enhancers Pancreatic Islets Pancreatic Islet
5 chr1:172417600-172420800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:172417800-172420800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr1:172417800-172420800 Enhancers Fetal Kidney kidney
8 chr1:172418000-172420800 Enhancers HUVEC blood vessel
9 chr1:172418000-172422200 Enhancers NH-A brain
10 chr1:172419200-172420800 Enhancers Fetal Heart heart
11 chr1:172419200-172420800 Enhancers Osteobl bone
12 chr1:172419400-172422200 Weak transcription Brain Substantia Nigra brain
13 chr1:172419600-172421400 Weak transcription Brain Hippocampus Middle brain
14 chr1:172419600-172421600 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:172419600-172422000 Weak transcription Right Ventricle heart
16 chr1:172419600-172423200 Enhancers K562 blood
17 chr1:172419600-172426000 Enhancers Fetal Intestine Large intestine
18 chr1:172419800-172421400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:172419800-172421400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr1:172419800-172421400 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:172419800-172424400 Weak transcription Primary monocytes fromperipheralblood blood
22 chr1:172420000-172420800 Flanking Active TSS HepG2 liver
23 chr1:172420000-172421600 Weak transcription Gastric stomach
24 chr1:172420000-172421800 Weak transcription Fetal Muscle Trunk muscle
25 chr1:172420200-172420800 Enhancers A549 lung
26 chr1:172420200-172421600 Weak transcription Right Atrium heart
27 chr1:172420200-172426000 Enhancers Fetal Intestine Small intestine
28 chr1:172420400-172421400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr1:172420400-172421400 Weak transcription Fetal Muscle Leg muscle
30 chr1:172420400-172421400 Weak transcription Stomach Mucosa stomach
31 chr1:172420400-172421400 Weak transcription HSMMtube muscle
32 chr1:172420400-172421600 Weak transcription Esophagus oesophagus
33 chr1:172420400-172421600 Weak transcription Left Ventricle heart
34 chr1:172420400-172421600 Weak transcription Pancreas Pancrea
35 chr1:172420400-172421800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:172420400-172421800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:172420400-172421800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:172420400-172421800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:172420400-172422000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:172420400-172422400 Enhancers Hela-S3 cervix
41 chr1:172420400-172422800 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr1:172420400-172425400 Weak transcription Duodenum Mucosa Duodenum
43 chr1:172420600-172421000 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr1:172420600-172421600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:172420600-172421600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:172420600-172421600 Weak transcription Placenta Placenta
47 chr1:172420600-172421600 Weak transcription Placenta Amnion Placenta Amnion
48 chr1:172420600-172421800 Weak transcription Muscle Satellite Cultured Cells --
49 chr1:172420600-172422800 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015