Variant report

Variant	rs146756769
Chromosome Location	chr7:27175808-27175809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:27175422-27180699	MCF10A-Er-Src	breast:	n/a	n/a
2	ATF3	chr7:27175370-27176398	A549	lung:	n/a	n/a
3	CREB1	chr7:27175576-27175957	A549	lung:	n/a	n/a
4	GATA3	chr7:27175406-27176490	MCF-7	breast:	n/a	chr7:27175658-27175666 chr7:27175577-27175587
5	JUND	chr7:27175463-27176288	HepG2	liver:	n/a	chr7:27175724-27175734 chr7:27175724-27175734
6	NR2F2	chr7:27175328-27176465	HepG2	liver:	n/a	chr7:27175945-27175960
7	FOS	chr7:27175571-27176356	MCF10A-Er-Src	breast:	n/a	chr7:27175724-27175734 chr7:27175723-27175734 chr7:27175724-27175734
8	HNF4A	chr7:27175538-27175916	HepG2	liver:	n/a	chr7:27175747-27175762 chr7:27175747-27175761
9	NR3C1	chr7:27175460-27175887	A549	lung:	n/a	n/a
10	EP300	chr7:27175238-27176550	A549	lung:	n/a	chr7:27175562-27175571
11	MAX	chr7:27175295-27176528	A549	lung:	n/a	n/a
12	RAD21	chr7:27175307-27176557	HCT-116	colon:	n/a	chr7:27176392-27176401
13	JUN	chr7:27175509-27175925	HUVEC	blood vessel:	n/a	chr7:27175724-27175734 chr7:27175724-27175734
14	RAD21	chr7:27175355-27176448	IMR90	lung:	n/a	chr7:27176392-27176401
15	ARID3A	chr7:27175249-27176352	HepG2	liver:	n/a	chr7:27176106-27176122
16	HDAC2	chr7:27175462-27176369	MCF-7	breast:	n/a	chr7:27176054-27176068
17	TCF7L2	chr7:27175499-27176365	HEK293	kidney:	n/a	n/a
18	POLR2A	chr7:27175568-27176446	PANC-1	pancreas:	n/a	n/a
19	FOXA2	chr7:27175482-27175960	HepG2	liver:	n/a	n/a
20	SMC3	chr7:27175476-27176394	HepG2	liver:	n/a	n/a
21	SP1	chr7:27175391-27176459	HCT-116	colon:	n/a	n/a
22	JUND	chr7:27175609-27175846	HepG2	liver:	n/a	chr7:27175724-27175734 chr7:27175724-27175734
23	EP300	chr7:27175609-27175811	K562	blood:	n/a	n/a
24	FOSL2	chr7:27175477-27176007	HepG2	liver:	n/a	chr7:27175724-27175734 chr7:27175722-27175733 chr7:27175724-27175734
25	JUND	chr7:27175555-27175924	A549	lung:	n/a	chr7:27175724-27175734 chr7:27175724-27175734
26	CEBPB	chr7:27175361-27176008	A549	lung:	n/a	n/a
27	HDAC2	chr7:27175462-27175968	HepG2	liver:	n/a	n/a
28	FOXA1	chr7:27175530-27175956	HepG2	liver:	n/a	n/a
29	RAD21	chr7:27175802-27176492	MCF-7	breast:	n/a	chr7:27176392-27176401
30	RXRA	chr7:27175430-27175994	HepG2	liver:	n/a	chr7:27175613-27175629
31	EP300	chr7:27175457-27176371	MCF-7	breast:	n/a	chr7:27175562-27175571
32	HNF4A	chr7:27175562-27175866	HepG2	liver:	n/a	chr7:27175747-27175762 chr7:27175747-27175761
33	NR3C1	chr7:27175445-27175911	A549	lung:	n/a	n/a
34	FOS	chr7:27175487-27176387	HUVEC	blood vessel:	n/a	chr7:27175724-27175734 chr7:27175723-27175734 chr7:27175724-27175734
35	MAX	chr7:27175404-27176476	A549	lung:	n/a	n/a
36	STAT3	chr7:27175542-27175809	MCF10A-Er-Src	breast:	n/a	chr7:27175564-27175572
37	RAD21	chr7:27175585-27176391	A549	lung:	n/a	n/a
38	FOXA1	chr7:27175453-27176020	HepG2	liver:	n/a	n/a
39	RAD21	chr7:27175339-27176533	A549	lung:	n/a	chr7:27176392-27176401
40	EP300	chr7:27175575-27176262	HepG2	liver:	n/a	n/a
41	CTCF	chr7:27175501-27176406	IMR90	lung:	n/a	chr7:27175773-27175781
42	MAFK	chr7:27175553-27176253	HepG2	liver:	n/a	n/a
43	MBD4	chr7:27175549-27176308	HepG2	liver:	n/a	n/a
44	CEBPB	chr7:27175585-27175909	HepG2	liver:	n/a	n/a
45	POLR2A	chr7:27175534-27175842	HCT-116	colon:	n/a	n/a
46	JUND	chr7:27175390-27176120	HCT-116	colon:	n/a	chr7:27175724-27175734 chr7:27175724-27175734
47	FOXA2	chr7:27175556-27175944	A549	lung:	n/a	n/a
48	CHD2	chr7:27175517-27175890	HepG2	liver:	n/a	n/a
49	SP1	chr7:27175441-27175967	HepG2	liver:	n/a	n/a
50	GATA2	chr7:27175464-27176404	HUVEC	blood vessel:	n/a	chr7:27175577-27175587

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:27173201-27176959..7:27238414-27242313	H1-hESC	embryonic stem cell:	embryo
2	chr7:26721088..26721712-chr7:27175807..27176765,2	MCF-7	breast:
3	7:27158219-27162022..7:27173201-27176959	H1-hESC	embryonic stem cell:	embryo
4	7:27143270-27156413..7:27173201-27176959	H1-hESC	embryonic stem cell:	embryo
5	chr7:27168902..27171913-chr7:27172340..27176747,4	K562	blood:
6	7:27173201-27176959..7:27203007-27207968	H1-hESC	embryonic stem cell:	embryo
7	chr7:26892969..26894016-chr7:27175632..27176342,3	MCF-7	breast:
8	chr7:26899720..26900649-chr7:27175363..27176615,9	MCF-7	breast:
9	chr7:26903826..26904489-chr7:27175411..27176270,2	MCF-7	breast:
10	chr7:27134844..27136914-chr7:27174495..27176327,2	MCF-7	breast:
11	chr7:26903264..26905993-chr7:27172832..27179682,7	MCF-7	breast:
12	chr7:26893161..26894119-chr7:27175695..27176233,2	K562	blood:
13	chr7:26893107..26894049-chr7:27175583..27176696,5	MCF-7	breast:
14	chr7:26899915..26900635-chr7:27175507..27176745,4	MCF-7	breast:
15	chr7:27175229..27177750-chr7:27182506..27185033,2	MCF-7	breast:
16	chr7:26897524..26906359-chr7:27169396..27177834,18	MCF-7	breast:

Variant related genes	Relation type
HOXA-AS3	TF binding region
ENSG00000243766	Chromatin interaction
ENSG00000253552	Chromatin interaction
ENSG00000005020	Chromatin interaction
ENSG00000233429	Chromatin interaction
ENSG00000254369	Chromatin interaction
ENSG00000078399	Chromatin interaction
ENSG00000197576	Chromatin interaction
ENSG00000105991	Chromatin interaction
ENSG00000106031	Chromatin interaction
ENSG00000105997	Chromatin interaction
ENSG00000106004	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv887856	chr7:27073731-27297791	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
6	nsv824038	chr7:27119294-27284522	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
7	nsv887857	chr7:27120689-27229549	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv824039	chr7:27121825-27294951	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
9	nsv824040	chr7:27121870-27295010	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
10	nsv887858	chr7:27127231-27188659	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
11	nsv887860	chr7:27127231-27196069	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
12	nsv887859	chr7:27127231-27196113	Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv887861	chr7:27127231-27206688	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
14	nsv887862	chr7:27127231-27217359	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
15	nsv887863	chr7:27127231-27243106	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
16	nsv887864	chr7:27127231-27243962	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
17	nsv887865	chr7:27127231-27247279	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
18	nsv887866	chr7:27127231-27248373	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
19	nsv887867	chr7:27127231-27252246	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
20	nsv824041	chr7:27128039-27294951	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
21	nsv606463	chr7:27135314-27182245	Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
22	nsv887868	chr7:27135314-27202289	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
23	nsv887869	chr7:27135314-27297791	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
24	nsv887871	chr7:27136308-27179814	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
25	nsv887872	chr7:27136308-27181437	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
26	nsv887873	chr7:27136308-27186495	Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
27	nsv887874	chr7:27136308-27196069	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
28	nsv1020608	chr7:27139892-27324004	Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
29	nsv538807	chr7:27139892-27324004	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
30	nsv1033316	chr7:27140645-27237951	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
31	nsv606465	chr7:27143757-27229549	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	174 gene(s)	inside rSNPs	diseases
32	nsv606466	chr7:27145024-27197319	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
33	nsv606467	chr7:27145100-27196113	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
34	nsv887875	chr7:27145100-27243962	Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
35	nsv532118	chr7:27146920-27354205	Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
36	nsv5674	chr7:27152562-27197341	Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
37	nsv887876	chr7:27168858-27196069	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
38	nsv824042	chr7:27169231-27247232	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
39	nsv887877	chr7:27169388-27217359	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
40	esv1824277	chr7:27169934-27176966	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
41	nsv887878	chr7:27175295-27214557	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
42	nsv887879	chr7:27175295-27297791	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27171200-27176400	Weak transcription	Lung	lung
2	chr7:27171200-27181400	Weak transcription	Esophagus	oesophagus
3	chr7:27172600-27178400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:27173000-27176400	Enhancers	Adipose Nuclei	Adipose
5	chr7:27173000-27176800	Enhancers	NHEK	skin
6	chr7:27173400-27177600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:27173600-27177600	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:27173800-27176400	Weak transcription	Psoas Muscle	Psoas
9	chr7:27173800-27178400	Enhancers	Fetal Intestine Small	intestine
10	chr7:27173800-27178600	Enhancers	Colon Smooth Muscle	Colon
11	chr7:27173800-27179200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:27174000-27176000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:27175000-27176800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:27175000-27177200	Bivalent Enhancer	Fetal Thymus	thymus
15	chr7:27175000-27177400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:27175200-27176200	Bivalent Enhancer	K562	blood
17	chr7:27175200-27176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:27175200-27176600	Enhancers	Stomach Mucosa	stomach
19	chr7:27175400-27176000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr7:27175400-27176000	Transcr. at gene 5' and 3'	Fetal Kidney	kidney
21	chr7:27175400-27176000	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr7:27175400-27176000	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr7:27175400-27176000	Flanking Active TSS	NHLF	lung
24	chr7:27175400-27176200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
25	chr7:27175400-27176200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr7:27175400-27176200	Flanking Active TSS	HepG2	liver
27	chr7:27175400-27176600	Flanking Active TSS	HUVEC	blood vessel
28	chr7:27175600-27176000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:27175600-27176000	Flanking Active TSS	Fetal Stomach	stomach
30	chr7:27175600-27176000	Flanking Active TSS	HMEC	breast
31	chr7:27175600-27176200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:27175600-27176200	Bivalent Enhancer	Primary T cells from cord blood	blood
33	chr7:27175600-27176400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:27175600-27176600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:27175600-27176600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:27175600-27177800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr7:27175600-27179200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:27175800-27176000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
39	chr7:27175800-27176000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:27175800-27176000	Flanking Bivalent TSS/Enh	Right Atrium	heart
41	chr7:27175800-27176000	Flanking Active TSS	A549	lung
42	chr7:27175800-27176000	Flanking Bivalent TSS/Enh	NH-A	brain
43	chr7:27175800-27176200	Bivalent Enhancer	Liver	Liver
44	chr7:27175800-27176200	Flanking Active TSS	Colonic Mucosa	Colon
45	chr7:27175800-27176200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
46	chr7:27175800-27176200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr7:27175800-27176400	Enhancers	Fetal Muscle Leg	muscle
48	chr7:27175800-27176400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:27175800-27176600	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr7:27175800-27176600	Flanking Active TSS	Fetal Intestine Large	intestine

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