Variant report

Variant	rs146784408
Chromosome Location	chr3:157993168-157993169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv965227	chr3:157993125-157994234	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157963800-157995800	Weak transcription	Gastric	stomach
2	chr3:157984800-158001200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:157985000-157993800	Weak transcription	Ovary	ovary
4	chr3:157985200-157997200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr3:157985200-157997200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:157985600-157998400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:157986000-157998000	Weak transcription	Fetal Intestine Large	intestine
8	chr3:157986200-157997200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:157986200-158001200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:157986200-158006600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:157986400-157997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:157986400-157997200	Weak transcription	Fetal Lung	lung
13	chr3:157986400-157997800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:157986400-157999200	Weak transcription	Adipose Nuclei	Adipose
15	chr3:157986400-158040000	Weak transcription	Primary B cells from cord blood	blood
16	chr3:157987600-157996000	Weak transcription	K562	blood
17	chr3:157988200-157993800	Weak transcription	Aorta	Aorta
18	chr3:157988200-157993800	Weak transcription	Left Ventricle	heart
19	chr3:157988200-157994000	Weak transcription	Lung	lung
20	chr3:157988200-157999000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:157988200-158009600	Weak transcription	Pancreas	Pancrea
22	chr3:157988400-157995600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:157988400-157997600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:157988400-158001800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:157990200-157995600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:157990200-157996000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:157990600-157993400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:157990600-157993400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:157990800-157993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:157990800-157995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:157990800-157997600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:157991200-157994000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:157991200-157997600	Weak transcription	Right Ventricle	heart
34	chr3:157991800-157996800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:157992200-157993800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr3:157992400-157993200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:157992400-157994200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:157992600-157996000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr3:157993000-157993400	Strong transcription	Primary T cells from cord blood	blood
40	chr3:157993000-157995200	Weak transcription	Dnd41	blood

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