Variant report

Variant	rs1468017
Chromosome Location	chr12:123208039-123208040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2454700	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13329	chr12:123178106-123210671	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	esv3348872	chr12:123192296-123213461	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123201200-123214600	Weak transcription	Spleen	Spleen
2	chr12:123201400-123209400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:123201400-123210000	Weak transcription	Primary B cells from cord blood	blood
4	chr12:123204200-123208200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:123204200-123208200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr12:123204800-123208200	Enhancers	HepG2	liver
7	chr12:123205200-123214600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:123205600-123208200	Enhancers	Primary hematopoietic stem cells	blood
9	chr12:123205600-123208400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr12:123205800-123209000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr12:123205800-123209800	Weak transcription	Hela-S3	cervix
12	chr12:123205800-123210400	Weak transcription	Placenta	Placenta
13	chr12:123205800-123210400	Weak transcription	NH-A	brain
14	chr12:123206400-123208400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:123207000-123208400	Enhancers	GM12878-XiMat	blood
16	chr12:123207000-123209400	Weak transcription	NHEK	skin
17	chr12:123207000-123209600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:123207000-123209600	Weak transcription	HUVEC	blood vessel
19	chr12:123207000-123210000	Weak transcription	Fetal Intestine Small	intestine
20	chr12:123207400-123208200	Enhancers	Adipose Nuclei	Adipose
21	chr12:123207400-123209600	Weak transcription	HMEC	breast
22	chr12:123207400-123214200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr12:123207800-123208200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr12:123207800-123208200	Enhancers	Fetal Thymus	thymus
25	chr12:123207800-123208400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:123207800-123209200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:123207800-123209400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr12:123207800-123210000	Weak transcription	Fetal Intestine Large	intestine
29	chr12:123207800-123214800	Weak transcription	Brain Anterior Caudate	brain
30	chr12:123208000-123208200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr12:123208000-123209000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr12:123208000-123209400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr12:123208000-123209600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr12:123208000-123209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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