Variant report

Variant	rs146810370
Chromosome Location	chr7:80275870-80275871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr7:80274953-80276274	PBDE	blood:	n/a	chr7:80275691-80275698 chr7:80275691-80275698 chr7:80275530-80275539 chr7:80275691-80275698 chr7:80275523-80275544 chr7:80275686-80275702
2	GATA1	chr7:80275395-80275883	PBDEFetal	blood:	n/a	chr7:80275691-80275698 chr7:80275691-80275698 chr7:80275530-80275539 chr7:80275691-80275698 chr7:80275523-80275544 chr7:80275686-80275702
3	POLR2A	chr7:80275071-80287547	PBDE	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:80275870-80275920	GM19239	blood:	n/a
2	chr7:80275870-80275920	NHDF-neo	bronchial:	n/a
3	chr7:80275870-80275920	NT2-D1	testis:	n/a
4	chr7:80275870-80275920	H1-hESC	embryonic stem cell:	embryo
5	chr7:80275870-80275920	HRCEpiC	kidney:	n/a
6	chr7:80275870-80275920	SK-N-MC	brain:	n/a
7	chr7:80275870-80275920	HEEpiC	esophagus:	n/a
8	chr7:80275870-80275920	HL-60	blood:	n/a
9	chr7:80275870-80275920	HRE	kidney:	n/a
10	chr7:80275870-80275920	SAEC	small airway:	n/a
11	chr7:80275870-80275920	A549	lung:	n/a
12	chr7:80275870-80275920	NHBE	bronchial:	n/a
13	chr7:80275870-80275920	BJ	skin:	n/a
14	chr7:80275870-80275920	AG09309	skin:	n/a
15	chr7:80275870-80275920	AG04449	skin:	fetal
16	chr7:80275870-80275920	Jurkat	blood:	n/a
17	chr7:80275870-80275920	HEK293	kidney:	embryo
18	chr7:80275870-80275920	ovcar-3	ovarian:	n/a
19	chr7:80275870-80275920	ProgFib	skin:	n/a
20	chr7:80275870-80275920	NH-A	brain:	n/a
21	chr7:80275870-80275920	ECC-1	luminal epithelium:	n/a
22	chr7:80275870-80275920	Caco-2	colon:	n/a
23	chr7:80275870-80275920	HRPEpiC	eye:	n/a
24	chr7:80275870-80275920	SK-N-SH	brain:	n/a
25	chr7:80275870-80275920	HCF	heart:	n/a
26	chr7:80275870-80275920	HepG2	liver:	n/a
27	chr7:80275870-80275920	GM12891	blood:	n/a
28	chr7:80275870-80275920	SK-N-SH_RA	brain:	n/a
29	chr7:80275870-80275920	T-47D	breast:	n/a
30	chr7:80275870-80275920	BE2_C	brain:	n/a
31	chr7:80275870-80275920	IMR90	lung:	fetal
32	chr7:80275870-80275920	HCM	heart:	n/a
33	chr7:80275870-80275920	PANC-1	pancreas:	n/a
34	chr7:80275870-80275920	AG09319	gingival:	n/a
35	chr7:80275870-80275920	HAEpiC	amniotic membrane:	n/a
36	chr7:80275870-80275920	LNCaP	prostate:	n/a
37	chr7:80275870-80275920	MCF-7	breast:	n/a
38	chr7:80275870-80275920	K562	blood:	n/a
39	chr7:80275870-80275920	HPAEpiC	pulmonary alveolar:	n/a
40	chr7:80275870-80275920	MCF10A-Er-Src	breast:	n/a
41	chr7:80275870-80275920	AG10803	skin:	n/a
42	chr7:80275870-80275920	RPTEC	kidney:	n/a
43	chr7:80275870-80275920	CMK	blood:	n/a
44	chr7:80275870-80275920	Hepatocyte	liver:	n/a
45	chr7:80275870-80275920	HIPEpiC	eye:	n/a
46	chr7:80275870-80275920	HMEC	breast:	n/a
47	chr7:80275870-80275920	HCPEpiC	choroid plexus:	n/a
48	chr7:80275870-80275920	PFSK-1	brain:	n/a
49	chr7:80275870-80275920	HCT-116	colon:	n/a
50	chr7:80275870-80275920	GM06990	blood:	n/a

No data

Variant related genes	Relation type
CD36	TF binding region
CD36	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888527	chr7:80248029-80279460	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv888528	chr7:80252518-80280117	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1027411	chr7:80256255-80276756	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1032295	chr7:80256738-80276756	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2761341	chr7:80256738-80276768	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv888530	chr7:80258564-80279460	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv888531	chr7:80258564-80280117	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv888532	chr7:80258564-80282636	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv464607	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv607683	chr7:80262830-80288854	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv888533	chr7:80272568-80289765	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv888534	chr7:80275455-80279460	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80269400-80305000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:80272000-80280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:80272600-80293600	Weak transcription	Placenta	Placenta
4	chr7:80272800-80282600	Weak transcription	Fetal Heart	heart
5	chr7:80273600-80278400	Weak transcription	Small Intestine	intestine
6	chr7:80273800-80278200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:80274000-80276200	Genic enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:80275200-80276000	Enhancers	NHDF-Ad	bronchial
9	chr7:80275200-80277600	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
10	chr7:80275200-80277600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr7:80275200-80277600	Active TSS	Right Atrium	heart
12	chr7:80275400-80276000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:80275400-80276200	Genic enhancers	Primary monocytes fromperipheralblood	blood
14	chr7:80275400-80276200	Transcr. at gene 5' and 3'	Left Ventricle	heart
15	chr7:80275600-80276200	Enhancers	HepG2	liver
16	chr7:80275600-80276600	Active TSS	Fetal Intestine Large	intestine
17	chr7:80275600-80277600	Active TSS	Fetal Intestine Small	intestine
18	chr7:80275600-80278400	Active TSS	Duodenum Mucosa	Duodenum
19	chr7:80275800-80276000	Flanking Active TSS	Liver	Liver
20	chr7:80275800-80276000	Enhancers	Right Ventricle	heart
21	chr7:80275800-80276200	Active TSS	Psoas Muscle	Psoas
22	chr7:80275800-80284200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:80275800-80288400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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