Variant report

Variant	rs146835557
Chromosome Location	chr13:30074225-30074226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30074160..30075942-chr13:30076052..30078263,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983696	chr13:30034016-30090454	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv430551	chr13:30061100-30113000	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv899960	chr13:30064014-30097240	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv561392	chr13:30071245-30091819	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1003602	chr13:30072953-30076249	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30047200-30081000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:30062400-30087200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:30065000-30077200	Weak transcription	Fetal Brain Female	brain
4	chr13:30066400-30084400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:30070200-30075600	Enhancers	Fetal Stomach	stomach
6	chr13:30070600-30077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:30070600-30077200	Weak transcription	Brain Anterior Caudate	brain
8	chr13:30070800-30075400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:30071000-30075600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:30071000-30128800	Strong transcription	Dnd41	blood
11	chr13:30071200-30076000	Weak transcription	Fetal Brain Male	brain
12	chr13:30071600-30075600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:30071600-30075600	Weak transcription	Right Ventricle	heart
14	chr13:30071600-30076800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:30071600-30077000	Weak transcription	Brain Germinal Matrix	brain
16	chr13:30071800-30074600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:30072000-30075200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:30072000-30078400	Strong transcription	Left Ventricle	heart
19	chr13:30072000-30080400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr13:30072200-30074400	Genic enhancers	Fetal Muscle Trunk	muscle
21	chr13:30072400-30074800	Enhancers	Pancreas	Pancrea
22	chr13:30072400-30079200	Strong transcription	Stomach Smooth Muscle	stomach
23	chr13:30072600-30075800	Genic enhancers	Fetal Muscle Leg	muscle
24	chr13:30072800-30082600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr13:30073200-30074600	Weak transcription	Aorta	Aorta
26	chr13:30073400-30075400	Weak transcription	Ovary	ovary
27	chr13:30073800-30074800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr13:30074200-30074600	Weak transcription	Gastric	stomach
29	chr13:30074200-30074800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr13:30074200-30074800	Enhancers	HSMMtube	muscle
31	chr13:30074200-30075400	Weak transcription	Fetal Heart	heart

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