Variant report

Variant	rs146839603
Chromosome Location	chr5:106732785-106732786
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv2038650	chr5:106732785-106732787	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106720400-106740800	Weak transcription	Aorta	Aorta
2	chr5:106725200-106733800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106725800-106740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:106728400-106738200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:106728600-106733600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:106729600-106732800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:106729800-106733000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:106730400-106737200	Weak transcription	Fetal Lung	lung
9	chr5:106731200-106733000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:106731600-106735000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:106731600-106738200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:106732000-106734200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr5:106732200-106733000	Enhancers	Left Ventricle	heart
14	chr5:106732200-106733000	Enhancers	Ovary	ovary
15	chr5:106732200-106737800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:106732200-106738200	Weak transcription	HSMM	muscle
17	chr5:106732200-106739400	Weak transcription	GM12878-XiMat	blood
18	chr5:106732200-106753200	Weak transcription	Fetal Kidney	kidney
19	chr5:106732400-106732800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:106732400-106733600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:106732400-106733800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:106732400-106737400	Weak transcription	Fetal Heart	heart
23	chr5:106732400-106737600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:106732400-106737800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:106732600-106733600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:106732600-106733600	Weak transcription	A549	lung
27	chr5:106732600-106733800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:106732600-106733800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr5:106732600-106733800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr5:106732600-106734400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:106732600-106736000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:106732600-106736600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:106732600-106736800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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