Variant report

Variant	rs146839808
Chromosome Location	chr2:100090425-100090426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100078933..100081024-chr2:100087446..100090857,3	K562	blood:
2	chr2:100088510..100094256-chr2:100103985..100108648,6	K562	blood:

Variant related genes	Relation type
ENSG00000135945	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1014604	chr2:99980851-100097884	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1006625	chr2:99984550-100096371	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv962113	chr2:100022168-100317461	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv874700	chr2:100062163-100099989	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv535841	chr2:100072790-100112121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1811477	chr2:100089078-100105013	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100048200-100090600	Weak transcription	Stomach Mucosa	stomach
2	chr2:100055800-100092600	Weak transcription	Gastric	stomach
3	chr2:100056600-100091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:100075200-100103000	Weak transcription	Hela-S3	cervix
5	chr2:100076200-100098400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:100076200-100105000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:100076600-100094800	Weak transcription	Spleen	Spleen
8	chr2:100076600-100104200	Weak transcription	NHLF	lung
9	chr2:100078600-100091000	Weak transcription	Aorta	Aorta
10	chr2:100078600-100091000	Weak transcription	Lung	lung
11	chr2:100078600-100092200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:100078600-100092600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:100078600-100096800	Weak transcription	NH-A	brain
14	chr2:100078800-100090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:100078800-100091000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:100078800-100091400	Weak transcription	Adipose Nuclei	Adipose
17	chr2:100078800-100091800	Weak transcription	Fetal Kidney	kidney
18	chr2:100078800-100093200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr2:100078800-100101400	Weak transcription	Fetal Lung	lung
20	chr2:100078800-100103000	Weak transcription	Primary B cells from cord blood	blood
21	chr2:100078800-100105000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:100079000-100091400	Weak transcription	Osteobl	bone
23	chr2:100079000-100091600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:100079200-100091000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:100079200-100091600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:100079200-100092000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr2:100079200-100092600	Weak transcription	Placenta	Placenta
28	chr2:100079200-100093000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr2:100079200-100096600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:100079200-100098400	Weak transcription	NHDF-Ad	bronchial
31	chr2:100079200-100104000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:100080200-100091000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:100080400-100103200	Weak transcription	Fetal Stomach	stomach
34	chr2:100080600-100098000	Weak transcription	Dnd41	blood
35	chr2:100080800-100103200	Weak transcription	HSMM	muscle
36	chr2:100081200-100092400	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr2:100085200-100091600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:100085600-100103000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr2:100086000-100090600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr2:100086000-100102000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr2:100086200-100092600	Weak transcription	Right Atrium	heart
42	chr2:100086200-100092600	Weak transcription	Right Ventricle	heart
43	chr2:100086200-100093200	Weak transcription	Psoas Muscle	Psoas
44	chr2:100086400-100102000	Weak transcription	Thymus	Thymus
45	chr2:100087200-100091000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:100087400-100091600	Enhancers	HMEC	breast
47	chr2:100087800-100090600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:100087800-100091000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr2:100087800-100091400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:100087800-100095000	Weak transcription	Primary hematopoietic stem cells	blood

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