The 2.0 version of rSNPBase

Variant report

Variant rs1468741
Chromosome Location chr2:20552651-20552652
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20550800-20552800 Flanking Active TSS Fetal Brain Male brain
2 chr2:20551000-20552800 Flanking Active TSS GM12878-XiMat blood
3 chr2:20551000-20554000 Flanking Active TSS Fetal Brain Female brain
4 chr2:20551600-20552800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
5 chr2:20551600-20552800 Enhancers Colon Smooth Muscle Colon
6 chr2:20551600-20553200 Enhancers Fetal Adrenal Gland Adrenal Gland
7 chr2:20551600-20553400 Enhancers Brain Hippocampus Middle brain
8 chr2:20551600-20553800 Enhancers H9 Cell Line embryonic stem cell
9 chr2:20551600-20553800 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr2:20551600-20553800 Enhancers Fetal Lung lung
11 chr2:20551600-20553800 Enhancers Fetal Muscle Leg muscle
12 chr2:20551600-20553800 Enhancers K562 blood
13 chr2:20551600-20554000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
14 chr2:20551600-20554200 Enhancers Cortex derived primary cultured neurospheres brain
15 chr2:20551600-20554200 Enhancers Placenta Placenta
16 chr2:20551600-20555200 Weak transcription HMEC breast
17 chr2:20551600-20555800 Weak transcription NHLF lung
18 chr2:20551600-20556000 Weak transcription Osteobl bone
19 chr2:20551600-20568800 Weak transcription Psoas Muscle Psoas
20 chr2:20551800-20552800 Enhancers HUES48 Cell Line embryonic stem cell
21 chr2:20551800-20552800 Enhancers Primary T helper 17 cells PMA-I stimulated --
22 chr2:20551800-20552800 Enhancers Primary mononuclear cells fromperipheralblood Blood
23 chr2:20551800-20552800 Enhancers Duodenum Mucosa Duodenum
24 chr2:20551800-20552800 Enhancers Fetal Intestine Large intestine
25 chr2:20551800-20552800 Enhancers Skeletal Muscle Female skeletal muscle
26 chr2:20551800-20553000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr2:20551800-20553400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr2:20551800-20553400 Enhancers Primary T killer naive cells fromperipheralblood blood
29 chr2:20551800-20553400 Enhancers Pancreatic Islets Pancreatic Islet
30 chr2:20551800-20553600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr2:20551800-20553600 Enhancers Fetal Heart heart
32 chr2:20551800-20553600 Enhancers Fetal Intestine Small intestine
33 chr2:20551800-20553800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr2:20551800-20553800 Enhancers Fetal Thymus thymus
35 chr2:20551800-20554000 Enhancers Rectal Mucosa Donor 31 rectum
36 chr2:20551800-20555200 Weak transcription NH-A brain
37 chr2:20551800-20555800 Weak transcription HSMM muscle
38 chr2:20551800-20555800 Weak transcription NHDF-Ad bronchial
39 chr2:20552000-20552800 Enhancers Primary T helper cells fromperipheralblood blood
40 chr2:20552000-20552800 Enhancers Primary T regulatory cells fromperipheralblood blood
41 chr2:20552000-20552800 Flanking Active TSS HepG2 liver
42 chr2:20552000-20553000 Enhancers Primary T cells fromperipheralblood blood
43 chr2:20552000-20553000 Enhancers Thymus Thymus
44 chr2:20552000-20553200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr2:20552000-20553400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr2:20552000-20553600 Enhancers Primary T helper naive cells from peripheral blood blood
47 chr2:20552000-20554000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
48 chr2:20552000-20554000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
49 chr2:20552000-20554200 Enhancers NHEK skin
50 chr2:20552000-20555200 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015