Variant report

Variant	rs146886877
Chromosome Location	chr18:12651367-12651368
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:12648702..12654959-chr18:12655130..12658770,8	K562	blood:
2	chr18:12649857..12654959-chr18:12655130..12658770,11	K562	blood:
3	chr18:12651259..12653780-chr18:12656567..12658681,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128789	Chromatin interaction
ENSG00000215527	Chromatin interaction
ENSG00000134278	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	nsv491873	chr18:12159445-12739784	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
3	esv3528039	chr18:12396582-12851293	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv3528041	chr18:12396641-12851245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv523743	chr18:12474505-12742809	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv1820040	chr18:12635601-12725236	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	esv1817845	chr18:12635601-12733705	Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv1821625	chr18:12635601-12733705	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv1791969	chr18:12643193-12697711	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv3397790	chr18:12649001-12673755	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv576497	chr18:12650900-12658293	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	nsv576498	chr18:12650900-12658436	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12607800-12651800	Weak transcription	Brain Germinal Matrix	brain
2	chr18:12633600-12655800	Weak transcription	Fetal Stomach	stomach
3	chr18:12637800-12652000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:12640400-12652000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr18:12643600-12651800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr18:12643800-12653000	Weak transcription	A549	lung
7	chr18:12644400-12651800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:12646000-12652200	Weak transcription	NH-A	brain
9	chr18:12646000-12653000	Weak transcription	Thymus	Thymus
10	chr18:12646000-12654000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr18:12646200-12651600	Weak transcription	HSMM	muscle
12	chr18:12646200-12651600	Weak transcription	HSMMtube	muscle
13	chr18:12646200-12651800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr18:12646200-12651800	Weak transcription	Fetal Kidney	kidney
15	chr18:12646200-12652600	Weak transcription	HMEC	breast
16	chr18:12646200-12652800	Weak transcription	Brain Anterior Caudate	brain
17	chr18:12646200-12652800	Weak transcription	K562	blood
18	chr18:12646200-12653000	Weak transcription	Right Atrium	heart
19	chr18:12646200-12653000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr18:12646200-12653000	Weak transcription	NHLF	lung
21	chr18:12646200-12657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr18:12646200-12657000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr18:12646400-12651800	Weak transcription	Brain Hippocampus Middle	brain
24	chr18:12646400-12652000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr18:12646400-12652000	Weak transcription	Fetal Intestine Small	intestine
26	chr18:12646400-12652200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr18:12646400-12652400	Weak transcription	Brain Angular Gyrus	brain
28	chr18:12646400-12652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr18:12646400-12652800	Weak transcription	Ovary	ovary
30	chr18:12646400-12653000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr18:12646400-12653000	Weak transcription	Fetal Thymus	thymus
32	chr18:12646400-12653000	Weak transcription	Psoas Muscle	Psoas
33	chr18:12646400-12656600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr18:12646400-12656600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr18:12646400-12657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr18:12646600-12651400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr18:12646600-12651800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr18:12646600-12652200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr18:12646600-12653000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr18:12646800-12652200	Weak transcription	Fetal Brain Male	brain
41	chr18:12647000-12653000	Weak transcription	Lung	lung
42	chr18:12648000-12656800	Weak transcription	Left Ventricle	heart
43	chr18:12648400-12651800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr18:12648400-12652600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr18:12648400-12656600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr18:12648600-12651600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr18:12648600-12651600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr18:12648600-12651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr18:12648600-12651800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr18:12648600-12651800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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