Variant report

Variant	rs146920018
Chromosome Location	chr9:97767844-97767845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97316005..97317970-chr9:97766242..97767931,2	MCF-7	breast:
2	chr9:97441331..97443986-chr9:97767707..97769717,2	MCF-7	breast:
3	chr9:97587607..97589933-chr9:97767549..97770278,2	MCF-7	breast:
4	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
5	chr9:97763979..97769403-chr9:97805439..97812937,10	MCF-7	breast:
6	chr9:97561245..97563934-chr9:97767178..97770063,2	MCF-7	breast:
7	chr9:97765581..97769970-chr9:97809027..97814302,8	MCF-7	breast:
8	chr16:28832667..28835339-chr9:97766191..97767859,2	MCF-7	breast:
9	chr9:97674991..97691307-chr9:97751911..97773298,151	MCF-7	breast:
10	chr9:97763635..97773461-chr9:97847821..97861280,36	MCF-7	breast:
11	chr1:149856773..149859757-chr9:97767567..97770095,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000168488	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000148120	Chromatin interaction
ENSG00000207617	Chromatin interaction
ENSG00000260796	Chromatin interaction
ENSG00000231806	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	esv3393598	chr9:97765956-97768504	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv3399008	chr9:97766206-97768629	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97765000-97768600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:97765000-97770400	Active TSS	Rectal Mucosa Donor 31	rectum
3	chr9:97765200-97770600	Active TSS	Aorta	Aorta
4	chr9:97765800-97770800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr9:97765800-97772600	Active TSS	Stomach Smooth Muscle	stomach
6	chr9:97766000-97768200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr9:97766000-97768600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:97766000-97768800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:97766000-97769000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr9:97766000-97769000	Active TSS	GM12878-XiMat	blood
11	chr9:97766000-97770000	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr9:97766000-97770200	Active TSS	Duodenum Mucosa	Duodenum
13	chr9:97766000-97770400	Active TSS	Ovary	ovary
14	chr9:97766000-97770400	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr9:97766000-97770400	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr9:97766000-97770400	Active TSS	NHLF	lung
17	chr9:97766000-97770600	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr9:97766000-97770600	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr9:97766000-97770800	Active TSS	Colonic Mucosa	Colon
20	chr9:97766000-97771000	Active TSS	Colon Smooth Muscle	Colon
21	chr9:97766200-97768000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
22	chr9:97766200-97768200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:97766200-97768400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr9:97766200-97768800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:97766200-97768800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:97766200-97769000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:97766200-97769400	Active TSS	Placenta	Placenta
28	chr9:97766200-97770400	Active TSS	Left Ventricle	heart
29	chr9:97766200-97770600	Active TSS	Brain Hippocampus Middle	brain
30	chr9:97766200-97771000	Active TSS	Right Ventricle	heart
31	chr9:97766200-97771200	Active TSS	Fetal Kidney	kidney
32	chr9:97766200-97771800	Active TSS	Right Atrium	heart
33	chr9:97766400-97768000	Active TSS	H9 Cell Line	embryonic stem cell
34	chr9:97766400-97768000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:97766400-97768000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr9:97766400-97768000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:97766400-97768000	Active TSS	Gastric	stomach
38	chr9:97766400-97768000	Active TSS	Lung	lung
39	chr9:97766400-97768000	Active TSS	NHDF-Ad	bronchial
40	chr9:97766400-97768200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr9:97766400-97768200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr9:97766400-97768200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
43	chr9:97766400-97768400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr9:97766400-97768400	Active TSS	Fetal Lung	lung
45	chr9:97766400-97768400	Active TSS	Placenta Amnion	Placenta Amnion
46	chr9:97766400-97768600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr9:97766400-97768600	Active TSS	NH-A	brain
48	chr9:97766400-97768600	Active TSS	NHEK	skin
49	chr9:97766400-97768800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:97766400-97768800	Active TSS	Fetal Intestine Large	intestine

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