Variant report

Variant	rs146924920
Chromosome Location	chr20:16206256-16206257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:16206255-16206305	SKMC	muscle:	n/a
2	chr20:16206255-16206305	BJ	skin:	n/a
3	chr20:16206255-16206305	BE2_C	brain:	n/a
4	chr20:16206255-16206305	GM19239	blood:	n/a
5	chr20:16206255-16206305	HEK293	kidney:	embryo
6	chr20:16206255-16206305	IMR90	lung:	fetal
7	chr20:16206255-16206305	HAEpiC	amniotic membrane:	n/a
8	chr20:16206255-16206305	HL-60	blood:	n/a
9	chr20:16206255-16206305	NHBE	bronchial:	n/a
10	chr20:16206255-16206305	Caco-2	colon:	n/a
11	chr20:16206255-16206305	HRCEpiC	kidney:	n/a
12	chr20:16206255-16206305	ProgFib	skin:	n/a
13	chr20:16206255-16206305	PFSK-1	brain:	n/a
14	chr20:16206255-16206305	SK-N-SH	brain:	n/a
15	chr20:16206255-16206305	RPTEC	kidney:	n/a
16	chr20:16206255-16206305	HEEpiC	esophagus:	n/a
17	chr20:16206255-16206305	GM06990	blood:	n/a
18	chr20:16206255-16206305	HCPEpiC	choroid plexus:	n/a
19	chr20:16206255-16206305	H1-hESC	embryonic stem cell:	embryo
20	chr20:16206255-16206305	SAEC	small airway:	n/a
21	chr20:16206255-16206305	Jurkat	blood:	n/a
22	chr20:16206255-16206305	CMK	blood:	n/a
23	chr20:16206255-16206305	HPAEpiC	pulmonary alveolar:	n/a
24	chr20:16206255-16206305	PANC-1	pancreas:	n/a
25	chr20:16206255-16206305	SK-N-SH_RA	brain:	n/a
26	chr20:16206255-16206305	U87	brain:	n/a
27	chr20:16206255-16206305	HMEC	breast:	n/a
28	chr20:16206255-16206305	GM12878	blood:	n/a
29	chr20:16206255-16206305	NB4	blood:	n/a
30	chr20:16206255-16206305	HNPCEpiC	eye:	n/a
31	chr20:16206255-16206305	AG09309	skin:	n/a
32	chr20:16206255-16206305	AoSMC	blood vessel:	n/a
33	chr20:16206255-16206305	NH-A	brain:	n/a
34	chr20:16206255-16206305	ECC-1	luminal epithelium:	n/a
35	chr20:16206255-16206305	MCF10A-Er-Src	breast:	n/a
36	chr20:16206255-16206305	LNCaP	prostate:	n/a
37	chr20:16206255-16206305	SK-N-MC	brain:	n/a
38	chr20:16206255-16206305	AG10803	skin:	n/a
39	chr20:16206255-16206305	T-47D	breast:	n/a
40	chr20:16206255-16206305	NT2-D1	testis:	n/a
41	chr20:16206255-16206305	AG09319	gingival:	n/a
42	chr20:16206255-16206305	Hela-S3	cervix:	n/a
43	chr20:16206255-16206305	ovcar-3	ovarian:	n/a
44	chr20:16206255-16206305	GM12891	blood:	n/a
45	chr20:16206255-16206305	HRE	kidney:	n/a
46	chr20:16206255-16206305	AG04450	lung:	fetal
47	chr20:16206255-16206305	HCT-116	colon:	n/a
48	chr20:16206255-16206305	AG04449	skin:	fetal
49	chr20:16206255-16206305	K562	blood:	n/a
50	chr20:16206255-16206305	HCF	heart:	n/a

No data

Variant related genes	Relation type
PPIAP17	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv178798	chr20:16205033-16214680	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16196200-16215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:16205800-16206600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:16206000-16206600	Enhancers	Adipose Nuclei	Adipose
4	chr20:16206200-16206600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:16206200-16207000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links