Variant report

Variant	rs146953878
Chromosome Location	chr22:32798565-32798566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1066118	chr22:32779078-32815334	Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3456836	chr22:32798339-32798815	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3366907	chr22:32798393-32798769	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3442066	chr22:32798535-32798693	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3456837	chr22:32798549-32798694	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32780800-32806400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr22:32780800-32806400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:32781200-32799200	Strong transcription	Duodenum Smooth Muscle	Duodenum
4	chr22:32781200-32801200	Strong transcription	Fetal Stomach	stomach
5	chr22:32781200-32802200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr22:32781200-32803200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr22:32781200-32804000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr22:32781200-32804200	Strong transcription	Stomach Smooth Muscle	stomach
9	chr22:32781200-32804600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr22:32781200-32804600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr22:32781200-32804800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr22:32781200-32805000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr22:32781200-32805400	Strong transcription	Fetal Muscle Leg	muscle
14	chr22:32781200-32806600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr22:32781400-32799200	Strong transcription	Lung	lung
16	chr22:32781400-32801200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr22:32781400-32802600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr22:32781400-32802600	Strong transcription	GM12878-XiMat	blood
19	chr22:32781400-32802600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr22:32781400-32803200	Strong transcription	Adipose Nuclei	Adipose
21	chr22:32781400-32803200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr22:32781400-32803600	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr22:32781400-32803800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr22:32781400-32803800	Strong transcription	Liver	Liver
25	chr22:32781400-32804400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr22:32781400-32804600	Strong transcription	Fetal Thymus	thymus
27	chr22:32781400-32804600	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr22:32781400-32804600	Strong transcription	Dnd41	blood
29	chr22:32781400-32804800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr22:32781400-32804800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr22:32781400-32804800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr22:32781400-32804800	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr22:32781400-32805000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr22:32781400-32805000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr22:32781400-32805000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr22:32781400-32805000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr22:32781400-32805000	Strong transcription	Fetal Intestine Large	intestine
38	chr22:32781400-32805000	Strong transcription	Fetal Lung	lung
39	chr22:32781400-32805000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr22:32781400-32805000	Strong transcription	Left Ventricle	heart
41	chr22:32781400-32805000	Strong transcription	Osteobl	bone
42	chr22:32781400-32805200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr22:32781400-32805200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr22:32781400-32805600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr22:32781400-32806400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr22:32781400-32806600	Strong transcription	Placenta	Placenta
47	chr22:32781600-32804800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr22:32781600-32804800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr22:32781600-32805000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr22:32781600-32805000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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