Variant report

Variant	rs146959606
Chromosome Location	chr17:45147251-45147252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45145658..45148463-chr17:45161187..45163786,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3492820	chr17:44174959-45161556	Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3492821	chr17:44174959-45161556	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3502492	chr17:44305975-45169159	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv3502493	chr17:44305975-45169159	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv833466	chr17:45020360-45204537	Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv522797	chr17:45084279-45183152	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	esv3332795	chr17:45116212-45209297	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	esv3386521	chr17:45116232-45209267	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	esv21010	chr17:45125753-45177221	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1059766	chr17:45130765-45203468	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	esv2760450	chr17:45130777-45225222	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	esv9886	chr17:45142849-45153796	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv978431	chr17:45146826-45151336	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45145000-45147400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr17:45145000-45147400	Weak transcription	Stomach Mucosa	stomach
3	chr17:45145000-45147400	Weak transcription	K562	blood
4	chr17:45145000-45147400	Weak transcription	Osteobl	bone
5	chr17:45145000-45147600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:45145000-45147800	Weak transcription	Fetal Thymus	thymus
7	chr17:45145000-45148000	Weak transcription	Liver	Liver
8	chr17:45145000-45148000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr17:45145000-45148200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr17:45145000-45148200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:45145000-45148200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr17:45145000-45148400	Weak transcription	Adipose Nuclei	Adipose
13	chr17:45145000-45148400	Weak transcription	Colonic Mucosa	Colon
14	chr17:45145000-45148600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr17:45145000-45148600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:45145000-45148600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:45145000-45148600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:45145000-45148600	Weak transcription	Left Ventricle	heart
19	chr17:45145000-45148800	Weak transcription	Fetal Intestine Large	intestine
20	chr17:45145000-45149400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr17:45145000-45149400	Weak transcription	Fetal Stomach	stomach
22	chr17:45145000-45149400	Weak transcription	Ovary	ovary
23	chr17:45145000-45149400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr17:45145000-45149800	Weak transcription	Spleen	Spleen
25	chr17:45145000-45150000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr17:45145000-45150000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr17:45145000-45150000	Weak transcription	Esophagus	oesophagus
28	chr17:45145000-45150000	Weak transcription	HSMM	muscle
29	chr17:45145000-45150200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr17:45145000-45150200	Weak transcription	Brain Hippocampus Middle	brain
31	chr17:45145000-45151600	Weak transcription	Psoas Muscle	Psoas
32	chr17:45145000-45152200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr17:45145000-45152400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr17:45145000-45158800	Weak transcription	NHLF	lung
35	chr17:45145000-45163600	Weak transcription	Aorta	Aorta
36	chr17:45145000-45163800	Weak transcription	Small Intestine	intestine
37	chr17:45145000-45164600	Weak transcription	Brain Angular Gyrus	brain
38	chr17:45145000-45169800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr17:45145000-45169800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr17:45145000-45169800	Weak transcription	Fetal Lung	lung
41	chr17:45145000-45176400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr17:45145000-45176600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr17:45145000-45176800	Weak transcription	Lung	lung
44	chr17:45145200-45147400	Weak transcription	HUVEC	blood vessel
45	chr17:45145200-45147600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr17:45145200-45147600	Weak transcription	A549	lung
47	chr17:45145200-45147800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr17:45145200-45148000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr17:45145200-45148200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr17:45145200-45148200	Weak transcription	Rectal Mucosa Donor 29	rectum

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