Variant report

Variant	rs1469663
Chromosome Location	chr12:105713200-105713201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105712887..105714905-chr12:105718530..105720792,2	MCF-7	breast:
2	chr12:105713189..105714168-chr12:105776809..105777553,3	MCF-7	breast:
3	chr12:105711659..105713820-chr12:105714084..105716843,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11831950	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11836865	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1469665	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1864892	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4964131	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4964132	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4964359	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56032632	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56130330	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66467637	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67114583	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67454169	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73181867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73181871	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv516472	chr12:105712603-105717598	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105706400-105715000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:105709400-105717200	Enhancers	Fetal Intestine Small	intestine
3	chr12:105709600-105713400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:105709800-105713800	Weak transcription	Primary T cells from cord blood	blood
5	chr12:105709800-105714600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:105710000-105713200	Weak transcription	Gastric	stomach
7	chr12:105710000-105713600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr12:105710000-105715000	Weak transcription	Lung	lung
9	chr12:105710600-105716200	Enhancers	Stomach Mucosa	stomach
10	chr12:105711000-105716800	Enhancers	Liver	Liver
11	chr12:105711200-105713400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:105711600-105713200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:105711600-105713200	Weak transcription	Pancreas	Pancrea
14	chr12:105711600-105713600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr12:105711600-105716600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr12:105711800-105715400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:105712000-105716600	Enhancers	NHDF-Ad	bronchial
18	chr12:105712200-105715400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:105712200-105715800	Weak transcription	HSMMtube	muscle
20	chr12:105712200-105716800	Enhancers	Fetal Intestine Large	intestine
21	chr12:105712400-105714000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:105712400-105715800	Weak transcription	HSMM	muscle
23	chr12:105712400-105720000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr12:105712600-105713800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr12:105712600-105714000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:105712600-105714000	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr12:105712600-105714600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr12:105712600-105715200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr12:105712600-105715600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr12:105712600-105715600	Enhancers	HepG2	liver
31	chr12:105712600-105715600	Weak transcription	Osteobl	bone
32	chr12:105712600-105716400	Enhancers	A549	lung
33	chr12:105712600-105717800	Weak transcription	NHLF	lung
34	chr12:105712800-105719000	Weak transcription	NH-A	brain
35	chr12:105713000-105715600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:105713000-105716000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr12:105713200-105713400	Enhancers	Pancreas	Pancrea
38	chr12:105713200-105714200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr12:105713200-105714200	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links