Variant report

Variant	rs146979013
Chromosome Location	chr6:71999070-71999071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:57)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:57 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:71999020-71999170	HCPEpiC	choroid plexus:	n/a	n/a
2	MAZ	chr6:71998909-71999191	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr6:71998004-71999170	H1-hESC	embryonic stem cell:	n/a	n/a
4	ZKSCAN1	chr6:71999053-71999198	Hela-S3	cervix:	n/a	n/a
5	MAZ	chr6:71997858-71999980	IMR90	lung:	n/a	n/a
6	SIN3AK20	chr6:71997893-71999076	PANC-1	pancreas:	n/a	n/a
7	POLR2A	chr6:71997764-71999171	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:71997747-71999605	GM19099	blood:	n/a	n/a
9	HA-E2F1	chr6:71997972-71999121	Hela-S3	cervix:	n/a	chr6:71998965-71998975 chr6:71998384-71998394 chr6:71998392-71998403 chr6:71998318-71998327
10	TAF1	chr6:71998266-71999149	H1-hESC	embryonic stem cell:	n/a	n/a
11	ELF1	chr6:71998920-71999220	GM12878	blood:	n/a	n/a
12	CTCF	chr6:71999040-71999190	GM12871	blood:	n/a	n/a
13	POLR2A	chr6:71997837-71999136	H1-hESC	embryonic stem cell:	n/a	n/a
14	MYC	chr6:71999054-71999232	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr6:71997803-71999251	GM18526	blood:	n/a	n/a
16	POLR2A	chr6:71998765-71999188	HUVEC	blood vessel:	n/a	n/a
17	ZNF263	chr6:71997455-71999152	HEK293-T-REx	kidney:	n/a	chr6:71998405-71998414 chr6:71997726-71997735
18	CTCF	chr6:71998920-71999070	GM12869	blood:	n/a	chr6:71998968-71998981
19	SPI1	chr6:71998936-71999256	HL-60	blood:	n/a	n/a
20	MAX	chr6:71998951-71999475	GM12878	blood:	n/a	n/a
21	TBP	chr6:71998361-71999147	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr6:71997845-71999411	GM18951	blood:	n/a	n/a
23	POLR2A	chr6:71998084-71999115	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr6:71998775-71999249	H1-neurons	neurons:	n/a	n/a
25	MAZ	chr6:71998950-71999397	GM12878	blood:	n/a	n/a
26	E2F1	chr6:71997807-71999100	Hela-S3	cervix:	n/a	chr6:71998965-71998975 chr6:71998384-71998394 chr6:71998392-71998403 chr6:71998318-71998327
27	POLR2A	chr6:71997860-71999845	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr6:71997809-71999236	MCF10A-Er-Src	breast:	n/a	n/a
29	STAT1	chr6:71998973-71999152	GM12878	blood:	n/a	chr6:71999110-71999117
30	POLR2A	chr6:71997931-71999227	GM19193	blood:	n/a	n/a
31	ZNF384	chr6:71999032-71999516	GM12878	blood:	n/a	n/a
32	POLR2A	chr6:71997980-71999431	NB4	blood:	n/a	n/a
33	SMARCB1	chr6:71997956-71999252	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr6:71998787-71999204	GM12878	blood:	n/a	n/a
35	CHD1	chr6:71998606-71999437	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr6:71998200-72000065	MCF10A-Er-Src	breast:	n/a	n/a
37	POLR2A	chr6:71998890-71999082	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr6:71996908-71999723	Raji	blood:	n/a	n/a
39	MAX	chr6:71998989-71999483	Hela-S3	cervix:	n/a	n/a
40	CTCF	chr6:71999060-71999210	GM12864	blood:	n/a	n/a
41	POLR2A	chr6:71998885-71999218	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr6:71998855-71999073	A549	lung:	n/a	n/a
43	SPI1	chr6:71998893-71999272	HL-60	blood:	n/a	n/a
44	TAF1	chr6:71998834-71999197	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr6:71997758-71999716	SK-N-SH	brain:	n/a	chr6:71998393-71998406 chr6:71998368-71998377 chr6:71999230-71999238 chr6:71998968-71998981
46	MXI1	chr6:71997884-71999405	IMR90	lung:	n/a	n/a
47	MXI1	chr6:71997609-72000196	SK-N-SH	brain:	n/a	n/a
48	MAX	chr6:71998294-71999148	HepG2	liver:	n/a	n/a
49	POLR2A	chr6:71997996-71999140	MCF-7	breast:	n/a	n/a
50	POLR2A	chr6:71998047-71999086	HEK293	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:71999062-71999112	PFSK-1	brain:	n/a
2	chr6:71999062-71999112	MCF-7	breast:	n/a
3	chr6:71999062-71999112	HIPEpiC	eye:	n/a
4	chr6:71999062-71999112	PrEC	prostate:	n/a
5	chr6:71999062-71999112	HCPEpiC	choroid plexus:	n/a
6	chr6:71999062-71999112	HMEC	breast:	n/a
7	chr6:71999062-71999112	NHDF-neo	bronchial:	n/a
8	chr6:71999062-71999112	BJ	skin:	n/a
9	chr6:71999062-71999112	AoSMC	blood vessel:	n/a
10	chr6:71999062-71999112	SAEC	small airway:	n/a
11	chr6:71999062-71999112	HCF	heart:	n/a
12	chr6:71999062-71999112	A549	lung:	n/a
13	chr6:71999062-71999112	LNCaP	prostate:	n/a
14	chr6:71999062-71999112	CMK	blood:	n/a
15	chr6:71999062-71999112	ECC-1	luminal epithelium:	n/a
16	chr6:71999062-71999112	Hela-S3	cervix:	n/a
17	chr6:71999062-71999112	H1-hESC	embryonic stem cell:	embryo
18	chr6:71999062-71999112	GM12878	blood:	n/a
19	chr6:71999062-71999112	AG10803	skin:	n/a
20	chr6:71999062-71999112	AG09309	skin:	n/a
21	chr6:71999062-71999112	HRPEpiC	eye:	n/a
22	chr6:71999062-71999112	BE2_C	brain:	n/a
23	chr6:71999062-71999112	Jurkat	blood:	n/a
24	chr6:71999062-71999112	SK-N-SH	brain:	n/a
25	chr6:71999062-71999112	HCM	heart:	n/a
26	chr6:71999062-71999112	Caco-2	colon:	n/a
27	chr6:71999062-71999112	NHBE	bronchial:	n/a
28	chr6:71999062-71999112	HCT-116	colon:	n/a
29	chr6:71999062-71999112	SK-N-SH_RA	brain:	n/a
30	chr6:71999062-71999112	HUVEC	blood vessel:	n/a
31	chr6:71999062-71999112	HPAEpiC	pulmonary alveolar:	n/a
32	chr6:71999062-71999112	MCF10A-Er-Src	breast:	n/a
33	chr6:71999062-71999112	SK-N-MC	brain:	n/a
34	chr6:71999062-71999112	Hepatocyte	liver:	n/a
35	chr6:71999062-71999112	K562	blood:	n/a
36	chr6:71999062-71999112	GM12892	blood:	n/a
37	chr6:71999062-71999112	HepG2	liver:	n/a
38	chr6:71999062-71999112	GM06990	blood:	n/a
39	chr6:71999062-71999112	GM12891	blood:	n/a
40	chr6:71999062-71999112	HAEpiC	amniotic membrane:	n/a
41	chr6:71999062-71999112	PANC-1	pancreas:	n/a
42	chr6:71999062-71999112	ovcar-3	ovarian:	n/a
43	chr6:71999062-71999112	HNPCEpiC	eye:	n/a
44	chr6:71999062-71999112	HRCEpiC	kidney:	n/a
45	chr6:71999062-71999112	NT2-D1	testis:	n/a
46	chr6:71999062-71999112	HL-60	blood:	n/a
47	chr6:71999062-71999112	SKMC	muscle:	n/a
48	chr6:71999062-71999112	T-47D	breast:	n/a
49	chr6:71999062-71999112	AG04450	lung:	fetal
50	chr6:71999062-71999112	RPTEC	kidney:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71997812..71999868-chr6:72020711..72023495,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232295	TF binding region
OGFRL1	TF binding region
ENSG00000232295	CpG island
OGFRL1	CpG island
ENSG00000232295	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792197	chr6:71997278-71999404	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1818720	chr6:71997278-71999404	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1830597	chr6:71997278-71999404	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1795873	chr6:71997278-72005794	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1841286	chr6:71997278-72006512	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3424106	chr6:71997456-72000004	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3385640	chr6:71997681-71999879	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv13513	chr6:71998410-71999070	Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1802752	chr6:71998480-72005794	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71997000-71999800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:71997000-72002000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:71997200-72000400	Active TSS	A549	lung
4	chr6:71997400-71999400	Active TSS	Brain Anterior Caudate	brain
5	chr6:71997400-72000000	Active TSS	Rectal Smooth Muscle	rectum
6	chr6:71997400-72000400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:71997600-71999200	Active TSS	Fetal Brain Female	brain
8	chr6:71997600-71999400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:71997600-71999400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:71997600-71999600	Active TSS	Aorta	Aorta
11	chr6:71997600-72000000	Active TSS	Brain Germinal Matrix	brain
12	chr6:71997600-72000200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr6:71997600-72001400	Active TSS	Brain Substantia Nigra	brain
14	chr6:71997800-71999200	Active TSS	Ovary	ovary
15	chr6:71997800-71999400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:71997800-71999400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:71997800-71999400	Active TSS	Esophagus	oesophagus
18	chr6:71997800-71999400	Active TSS	Left Ventricle	heart
19	chr6:71997800-71999400	Active TSS	Placenta Amnion	Placenta Amnion
20	chr6:71997800-71999400	Active TSS	Psoas Muscle	Psoas
21	chr6:71997800-71999400	Active TSS	Right Atrium	heart
22	chr6:71997800-71999600	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:71997800-71999600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:71997800-71999600	Active TSS	HSMM	muscle
25	chr6:71997800-71999800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:71997800-71999800	Active TSS	Brain Hippocampus Middle	brain
27	chr6:71997800-71999800	Active TSS	Right Ventricle	heart
28	chr6:71997800-72000800	Active TSS	HSMMtube	muscle
29	chr6:71997800-72002000	Active TSS	Brain Cingulate Gyrus	brain
30	chr6:71997800-72003000	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:71998000-71999200	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:71998000-71999200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:71998000-71999200	Active TSS	Adipose Nuclei	Adipose
34	chr6:71998000-71999200	Active TSS	Duodenum Mucosa	Duodenum
35	chr6:71998000-71999200	Active TSS	Gastric	stomach
36	chr6:71998000-71999200	Active TSS	Osteobl	bone
37	chr6:71998000-71999400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:71998000-71999400	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr6:71998000-71999400	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr6:71998000-71999400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:71998000-71999400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:71998000-71999400	Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr6:71998000-71999400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr6:71998000-71999400	Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr6:71998000-71999400	Active TSS	Fetal Intestine Small	intestine
46	chr6:71998000-71999400	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr6:71998000-71999400	Active TSS	Thymus	Thymus
48	chr6:71998000-71999400	Active TSS	Hela-S3	cervix
49	chr6:71998000-71999600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:71998000-71999600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links