Variant report

Variant	rs1469891
Chromosome Location	chr1:217077998-217077999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217065075..217066697-chr1:217076274..217078802,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1025654	0.80[YRI][hapmap]
rs2818740	1.00[EUR][1000 genomes]
rs2818741	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4147268	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs61818570	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062600-217078000	Weak transcription	Pancreas	Pancrea
2	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:217072200-217082800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:217074400-217080000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:217074600-217078800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:217075200-217078800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:217075800-217079000	Enhancers	HepG2	liver
8	chr1:217076000-217078200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:217076000-217078200	Enhancers	NH-A	brain
10	chr1:217076000-217078400	Enhancers	Fetal Lung	lung
11	chr1:217076000-217078400	Enhancers	Stomach Mucosa	stomach
12	chr1:217076000-217078600	Enhancers	Right Atrium	heart
13	chr1:217076000-217079000	Enhancers	Fetal Heart	heart
14	chr1:217076000-217079000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:217076000-217079400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:217076400-217078800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:217076600-217079600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:217076600-217079800	Weak transcription	Small Intestine	intestine
19	chr1:217076800-217078200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:217076800-217083600	Weak transcription	Brain Anterior Caudate	brain
21	chr1:217077000-217078600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr1:217077000-217078600	Flanking Active TSS	Fetal Intestine Small	intestine
23	chr1:217077000-217081600	Weak transcription	Gastric	stomach
24	chr1:217077000-217082400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:217077200-217078200	Enhancers	Placenta	Placenta
26	chr1:217077400-217078200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:217077400-217078400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:217077400-217078400	Active TSS	Duodenum Mucosa	Duodenum
29	chr1:217077400-217079000	Enhancers	NHEK	skin
30	chr1:217077400-217080000	Enhancers	HMEC	breast
31	chr1:217077600-217078200	Active TSS	Fetal Intestine Large	intestine
32	chr1:217077800-217078000	Enhancers	Right Ventricle	heart
33	chr1:217077800-217078200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr1:217077800-217079400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links