Variant report

Variant	rs146995628
Chromosome Location	chr1:150717214-150717215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150716385..150719781-chr1:150720227..150722599,4	K562	blood:

Variant related genes	Relation type
ENSG00000163131	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv872419	chr1:150699199-150738759	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3372156	chr1:150715228-150718076	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3437226	chr1:150715628-150717826	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150701400-150727400	Weak transcription	Left Ventricle	heart
2	chr1:150704000-150736600	Weak transcription	Fetal Stomach	stomach
3	chr1:150704600-150717400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:150705400-150723800	Weak transcription	Gastric	stomach
5	chr1:150705600-150723800	Weak transcription	Thymus	Thymus
6	chr1:150708400-150733000	Weak transcription	Fetal Intestine Large	intestine
7	chr1:150709000-150719000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:150709000-150723800	Weak transcription	Esophagus	oesophagus
9	chr1:150709000-150727400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:150710200-150729200	Weak transcription	Psoas Muscle	Psoas
11	chr1:150711000-150735600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:150712000-150737800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:150713400-150718800	Weak transcription	Adipose Nuclei	Adipose
14	chr1:150713400-150719200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:150713600-150717400	Weak transcription	Lung	lung
16	chr1:150713600-150717400	Weak transcription	Spleen	Spleen
17	chr1:150714600-150723800	Weak transcription	Fetal Intestine Small	intestine
18	chr1:150714800-150732200	Weak transcription	Stomach Mucosa	stomach
19	chr1:150715000-150717400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr1:150715600-150728000	Weak transcription	Brain Anterior Caudate	brain
21	chr1:150715800-150717400	Weak transcription	Primary T cells from cord blood	blood
22	chr1:150715800-150717400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr1:150715800-150717400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:150715800-150717400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr1:150715800-150717400	Weak transcription	GM12878-XiMat	blood
26	chr1:150715800-150717600	Weak transcription	Liver	Liver
27	chr1:150715800-150736200	Weak transcription	Small Intestine	intestine
28	chr1:150716600-150737000	Weak transcription	Pancreas	Pancrea
29	chr1:150717000-150720600	Strong transcription	Fetal Thymus	thymus
30	chr1:150717000-150720800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr1:150717000-150721200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr1:150717000-150721600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:150717000-150724200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr1:150717000-150724400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr1:150717000-150730800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:150717000-150731000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr1:150717000-150731400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:150717000-150732000	Strong transcription	Primary B cells from cord blood	blood
39	chr1:150717000-150732200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr1:150717000-150732200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:150717000-150732400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr1:150717000-150732800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr1:150717000-150733000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:150717200-150720000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr1:150717200-150720000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:150717200-150720200	Strong transcription	Colonic Mucosa	Colon
47	chr1:150717200-150721400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:150717200-150728000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr1:150717200-150730600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr1:150717200-150730800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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