Variant report

Variant	rs147005025
Chromosome Location	chr12:117083857-117083858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117082254..117085141-chr12:117093352..117095965,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560321	chr12:117083560-117087901	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv560322	chr12:117083560-117088109	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117074200-117084000	Weak transcription	Gastric	stomach
2	chr12:117078000-117085800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr12:117078400-117084200	Weak transcription	Pancreas	Pancrea
4	chr12:117078400-117085600	Weak transcription	Thymus	Thymus
5	chr12:117080600-117088000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:117080600-117088000	Weak transcription	Adipose Nuclei	Adipose
7	chr12:117081200-117085400	Weak transcription	Dnd41	blood
8	chr12:117081400-117085000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr12:117082200-117084400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:117082400-117086200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:117083000-117084400	Enhancers	Placenta	Placenta
12	chr12:117083200-117085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr12:117083200-117088200	Weak transcription	Right Atrium	heart
14	chr12:117083600-117084000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:117083600-117084000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr12:117083600-117084000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:117083600-117084200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr12:117083600-117084200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr12:117083600-117084200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr12:117083600-117084400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr12:117083600-117084400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr12:117083800-117084000	Enhancers	Lung	lung
23	chr12:117083800-117084200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr12:117083800-117084400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr12:117083800-117084600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links