Variant report

Variant	rs1470761
Chromosome Location	chr1:166110181-166110182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10494452	0.81[GIH][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs12132376	0.85[EUR][1000 genomes]
rs17423493	0.83[EUR][1000 genomes]
rs17423848	0.85[EUR][1000 genomes]
rs4656480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61835124	0.84[EUR][1000 genomes]
rs61835125	0.81[EUR][1000 genomes]
rs61835126	0.83[EUR][1000 genomes]
rs61835127	0.85[EUR][1000 genomes]
rs61835129	0.84[EUR][1000 genomes]
rs7522889	0.96[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:166106200-166112400	Weak transcription	Psoas Muscle	Psoas
3	chr1:166106200-166119000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:166106600-166123200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:166109200-166119000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:166109400-166114600	Weak transcription	Spleen	Spleen
7	chr1:166109600-166111200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:166110000-166114400	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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