Variant report

Variant	rs147092282
Chromosome Location	chr17:37876528-37876529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37874861..37876535-chr17:37884600..37886557,2	K562	blood:
2	chr17:37856670..37858872-chr17:37874487..37877508,3	MCF-7	breast:
3	chr17:37858390..37860926-chr17:37875652..37877494,2	K562	blood:
4	chr17:37875103..37877735-chr17:37878952..37881487,4	K562	blood:
5	chr17:37870758..37873083-chr17:37874555..37877273,2	K562	blood:
6	chr17:37875233..37878023-chr17:37910337..37912992,2	MCF-7	breast:
7	chr17:37843958..37845642-chr17:37874066..37877258,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161395	Chromatin interaction
ENSG00000141736	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	esv1792029	chr17:37797757-37886460	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv1056234	chr17:37862605-37909988	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv908216	chr17:37863015-37879588	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv908217	chr17:37863708-37879588	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv574993	chr17:37866135-37880978	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	nsv908218	chr17:37866591-37879588	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv1829991	chr17:37869192-37876898	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv275276	chr17:37876203-37876806	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37858000-37885200	Weak transcription	Fetal Brain Male	brain
2	chr17:37858000-37885600	Weak transcription	Hela-S3	cervix
3	chr17:37858200-37882600	Weak transcription	NHDF-Ad	bronchial
4	chr17:37858400-37879600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:37859400-37881000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr17:37861400-37883600	Weak transcription	Brain Substantia Nigra	brain
7	chr17:37862200-37877000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
8	chr17:37862200-37885200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr17:37862400-37876800	Strong transcription	HepG2	liver
10	chr17:37862400-37877600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:37862400-37878800	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr17:37862400-37885400	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr17:37862400-37885600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:37862400-37885600	Strong transcription	Fetal Stomach	stomach
15	chr17:37862400-37885800	Weak transcription	Right Atrium	heart
16	chr17:37862600-37885600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr17:37862800-37878800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:37862800-37883200	Weak transcription	Small Intestine	intestine
19	chr17:37862800-37885600	Strong transcription	Fetal Intestine Large	intestine
20	chr17:37863000-37876600	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr17:37863000-37877000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr17:37863000-37878800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr17:37863000-37879000	Strong transcription	HSMMtube	muscle
24	chr17:37863000-37879600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:37863000-37885600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:37863200-37876800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:37863200-37879400	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr17:37863200-37885600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:37863200-37885800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr17:37863400-37876800	Strong transcription	Osteobl	bone
31	chr17:37863600-37883000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr17:37863600-37885600	Strong transcription	Fetal Intestine Small	intestine
33	chr17:37863800-37881000	Weak transcription	Thymus	Thymus
34	chr17:37863800-37881200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr17:37864600-37882200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr17:37864800-37883400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr17:37865000-37884800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr17:37865800-37884200	Weak transcription	Brain Angular Gyrus	brain
39	chr17:37866000-37885000	Weak transcription	Primary B cells from cord blood	blood
40	chr17:37866200-37879400	Strong transcription	Placenta	Placenta
41	chr17:37866600-37879600	Weak transcription	Fetal Brain Female	brain
42	chr17:37866800-37876800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr17:37867000-37882800	Weak transcription	Fetal Thymus	thymus
44	chr17:37868400-37882800	Weak transcription	Brain Anterior Caudate	brain
45	chr17:37869200-37883000	Weak transcription	Brain Hippocampus Middle	brain
46	chr17:37870200-37876800	Strong transcription	Aorta	Aorta
47	chr17:37870400-37876600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr17:37870400-37878600	Strong transcription	Fetal Lung	lung
49	chr17:37871400-37876600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr17:37871400-37876800	Strong transcription	Duodenum Smooth Muscle	Duodenum

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