Variant report

Variant	rs1471449
Chromosome Location	chr13:55306699-55306700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1020967	0.83[ASN][1000 genomes]
rs1478648	0.81[EUR][1000 genomes]
rs1478649	0.81[EUR][1000 genomes]
rs1478650	0.81[EUR][1000 genomes]
rs1600227	1.00[ASN][1000 genomes]
rs1600228	0.81[EUR][1000 genomes]
rs1842057	0.89[ASN][1000 genomes]
rs2447970	0.83[ASN][1000 genomes]
rs2447978	0.92[EUR][1000 genomes]
rs2447982	0.82[EUR][1000 genomes]
rs2447984	0.82[EUR][1000 genomes]
rs2491038	0.83[ASN][1000 genomes]
rs2491039	0.83[ASN][1000 genomes]
rs2927863	0.81[EUR][1000 genomes]
rs3000710	0.82[EUR][1000 genomes]
rs3000711	0.83[EUR][1000 genomes]
rs55889672	0.86[ASN][1000 genomes]
rs55957980	0.82[ASN][1000 genomes]
rs56256911	0.86[ASN][1000 genomes]
rs7317305	1.00[ASN][1000 genomes]
rs7326567	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328327	0.83[ASN][1000 genomes]
rs9316739	0.83[ASN][1000 genomes]
rs9527239	0.83[ASN][1000 genomes]
rs9527240	0.83[ASN][1000 genomes]
rs9527242	0.83[ASN][1000 genomes]
rs9536790	0.83[ASN][1000 genomes]
rs9536792	0.83[ASN][1000 genomes]
rs9536823	1.00[ASN][1000 genomes]
rs9536824	1.00[ASN][1000 genomes]
rs9536829	1.00[ASN][1000 genomes]
rs9536831	0.84[ASN][1000 genomes]
rs9536838	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917186	chr13:55022134-55433232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1048599	chr13:55143426-55476042	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1051640	chr13:55143426-55478547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv561703	chr13:55143754-55473732	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv916104	chr13:55154006-55433232	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052745	chr13:55159674-55459161	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv541779	chr13:55159674-55459161	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv32904	chr13:55305891-55308489	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55306400-55309000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr13:55306600-55308000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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