Variant report

Variant	rs147176216
Chromosome Location	chr13:95357961-95357962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr13:95357752-95358407	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr13:95357175-95358521	H1-hESC	embryonic stem cell:	n/a	chr13:95358229-95358238
3	POLR2A	chr13:95357957-95358121	H1-hESC	embryonic stem cell:	n/a	n/a
4	E2F6	chr13:95356949-95358691	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr13:95356969-95358253	H1-hESC	embryonic stem cell:	n/a	chr13:95358229-95358238
6	MAX	chr13:95357005-95358172	H1-hESC	embryonic stem cell:	n/a	n/a
7	E2F6	chr13:95357414-95358187	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95357906..95359959-chr13:95361552..95364059,2	MCF-7	breast:
2	chr13:95325863..95327596-chr13:95357586..95359779,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOX21-1	chr13:95357000-95358211	ENSG00000248922
2	lnc-SOX21-1	chr13:95357954-95358215	XLOC_010695
3	lnc-SOX21-1	chr13:95356998-95358211	NONHSAT034735
4	lnc-SOX21-1	chr13:95357013-95357970	NONHSAT034736
5	lnc-SOX21-1	chr13:95357743-95358211	NONHSAT034737

No data

Variant related genes	Relation type
LINC00391	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1824604	chr13:95357807-95365771	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95353800-95358000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:95354600-95358600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr13:95355800-95359600	Weak transcription	Pancreas	Pancrea
4	chr13:95356400-95358600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95356800-95358000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr13:95357200-95358000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:95357200-95358000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:95357200-95358000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:95357200-95358400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:95357200-95359600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr13:95357400-95358000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr13:95357400-95358000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr13:95357400-95358200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:95357400-95358400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr13:95357600-95358000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr13:95357600-95358000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr13:95357600-95358000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:95357600-95358000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
19	chr13:95357600-95358000	Bivalent Enhancer	Spleen	Spleen
20	chr13:95357600-95358200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
21	chr13:95357600-95358200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:95357600-95360800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:95357800-95358000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
24	chr13:95357800-95358000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr13:95357800-95358000	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:95357800-95358000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:95357800-95358200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
28	chr13:95357800-95359600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links