Variant report

Variant	rs1472352
Chromosome Location	chr4:121580050-121580051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12507590	0.86[AMR][1000 genomes]
rs1390553	0.86[AMR][1000 genomes]
rs1390554	0.86[AMR][1000 genomes]
rs17051186	0.86[AMR][1000 genomes]
rs2029886	0.88[AMR][1000 genomes]
rs2029887	0.86[AMR][1000 genomes]
rs56765462	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121577800-121580800	Weak transcription	Aorta	Aorta
2	chr4:121579400-121580800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:121579600-121580600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:121579600-121580800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:121579600-121581000	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:121579800-121580400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr4:121579800-121580400	Enhancers	Fetal Stomach	stomach
8	chr4:121579800-121580400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:121580000-121580200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:121580000-121580200	Enhancers	Spleen	Spleen
11	chr4:121580000-121580400	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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