Variant report

Variant	rs1472402
Chromosome Location	chr12:42263030-42263031
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10467186	0.82[EUR][1000 genomes]
rs10785304	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10785305	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10785306	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10785308	0.83[EUR][1000 genomes]
rs10880173	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10880175	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11181184	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11181200	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11181202	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11181203	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11181220	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12372521	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12815952	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1391003	0.80[AMR][1000 genomes]
rs1391005	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1391006	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1472403	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497149	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1948597	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2079901	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2079902	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2079903	0.81[EUR][1000 genomes]
rs2109528	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2109529	0.80[EUR][1000 genomes]
rs2159588	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2173159	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2406452	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3858732	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768376	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7295842	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs734384	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs734385	0.86[ASN][1000 genomes]
rs961858	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs961859	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs984644	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42262800-42263600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr12:42263000-42263400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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