Variant report

Variant	rs147283703
Chromosome Location	chr9:110101157-110101158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110099927..110101842-chr9:110102042..110103767,2	MCF-7	breast:
2	chr4:40649327..40650237-chr9:110101079..110101645,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAD23B-1	chr9:110100744-110101430	XLOC_007505

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1042965	chr9:110100745-110126661	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
3	chr9:110087600-110103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:110088400-110101400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:110088600-110101600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:110090400-110101800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:110091000-110103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:110092000-110101800	Strong transcription	Primary T cells from cord blood	blood
9	chr9:110093000-110103400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:110093200-110101800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:110093200-110103200	Strong transcription	A549	lung
12	chr9:110093200-110103400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:110094600-110101600	Strong transcription	H9 Cell Line	embryonic stem cell
14	chr9:110094800-110101800	Strong transcription	Fetal Intestine Small	intestine
15	chr9:110095000-110104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:110095400-110101600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:110095600-110103400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:110096000-110103400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:110096200-110103200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr9:110096200-110103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:110096600-110103200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:110096600-110103400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:110096600-110103400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:110096800-110102600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:110096800-110103400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:110096800-110103400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:110096800-110107200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:110097000-110102600	Weak transcription	Colonic Mucosa	Colon
29	chr9:110097000-110103200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:110097000-110103200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr9:110097000-110103400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr9:110097000-110103400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:110097000-110103400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:110097000-110103400	Weak transcription	Gastric	stomach
35	chr9:110097000-110103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:110097000-110103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:110097000-110104600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:110097000-110107200	Weak transcription	Fetal Kidney	kidney
39	chr9:110097000-110107600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:110097200-110103600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:110097200-110113800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr9:110097400-110103200	Weak transcription	Primary B cells from cord blood	blood
43	chr9:110097600-110101200	Genic enhancers	HSMM	muscle
44	chr9:110097600-110103200	Weak transcription	Fetal Thymus	thymus
45	chr9:110097600-110103400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr9:110097800-110103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:110097800-110103600	Weak transcription	Hela-S3	cervix
48	chr9:110098000-110102400	Weak transcription	Aorta	Aorta
49	chr9:110098000-110103200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr9:110098000-110103200	Weak transcription	K562	blood

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