Variant report

Variant	rs1472872
Chromosome Location	chr4:175243815-175243816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:175204124..175207336-chr4:175242783..175246070,3	K562	blood:
2	chr4:175243692..175245617-chr4:175259102..175261291,2	K562	blood:
3	chr4:175205836..175208644-chr4:175242544..175244283,2	K562	blood:

Variant related genes	Relation type
ENSG00000164118	Chromatin interaction
ENSG00000164117	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34261835	0.86[ASN][1000 genomes]
rs57241669	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6553781	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175214600-175244800	Weak transcription	Psoas Muscle	Psoas
2	chr4:175214600-175245400	Weak transcription	HSMM	muscle
3	chr4:175214600-175254800	Weak transcription	Esophagus	oesophagus
4	chr4:175230000-175245800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:175230800-175246200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:175232400-175247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:175233800-175252600	Weak transcription	Left Ventricle	heart
8	chr4:175233800-175255800	Weak transcription	Fetal Intestine Large	intestine
9	chr4:175236200-175258400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:175236400-175245400	Weak transcription	NHDF-Ad	bronchial
11	chr4:175237800-175245600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:175238000-175244800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:175238000-175254800	Weak transcription	Adipose Nuclei	Adipose
14	chr4:175238000-175255400	Weak transcription	Primary B cells from cord blood	blood
15	chr4:175239200-175246000	Weak transcription	HMEC	breast
16	chr4:175239200-175253600	Weak transcription	NHEK	skin
17	chr4:175239400-175248400	Weak transcription	Primary T cells from cord blood	blood
18	chr4:175240400-175245400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:175240400-175245600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:175240400-175245600	Weak transcription	Osteobl	bone
21	chr4:175240400-175245800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:175241400-175257400	Weak transcription	Fetal Thymus	thymus
23	chr4:175242200-175252400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:175242400-175245400	Weak transcription	K562	blood
25	chr4:175242400-175253000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links