Variant report
| Variant | rs1472916 |
|---|---|
| Chromosome Location | chr5:108048835-108048836 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272523 | Chromatin interaction |
| ENSG00000151422 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10079165 | 0.83[ASW][hapmap] |
| rs1109617 | 1.00[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11240982 | 0.96[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11739006 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12153703 | 0.96[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs13173714 | 1.00[CEU][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs34660781 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4957789 | 1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6871143 | 0.85[CEU][hapmap] |
| rs6871239 | 0.96[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.81[EUR][1000 genomes] |
| rs6889967 | 0.85[CEU][hapmap] |
| rs6892439 | 0.81[EUR][1000 genomes] |
| rs7700630 | 0.91[ASW][hapmap];0.81[MEX][hapmap] |
| rs7716485 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
