Variant report

Variant	rs147300816
Chromosome Location	chr9:110050455-110050456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110049581..110051989-chr9:110070046..110072937,2	MCF-7	breast:
2	chr9:110050203..110052215-chr9:110053888..110055858,2	K562	blood:
3	chr9:110049612..110053509-chr9:110059334..110062914,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110045000-110050600	Active TSS	NHLF	lung
2	chr9:110046800-110050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:110046800-110050800	Weak transcription	Gastric	stomach
4	chr9:110046800-110050800	Weak transcription	Pancreas	Pancrea
5	chr9:110046800-110051000	Weak transcription	Spleen	Spleen
6	chr9:110047200-110050600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:110047200-110050800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:110047200-110052400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:110047200-110052600	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:110047200-110054600	Weak transcription	Lung	lung
11	chr9:110047600-110067200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:110047800-110051800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:110047800-110054200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr9:110048000-110051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:110048000-110051200	Enhancers	Thymus	Thymus
16	chr9:110048000-110053200	Weak transcription	Fetal Thymus	thymus
17	chr9:110048000-110056000	Weak transcription	Aorta	Aorta
18	chr9:110048000-110058400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:110048400-110051200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:110048400-110051400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:110048400-110051800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr9:110048400-110052800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr9:110048400-110058000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr9:110048600-110050600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:110048600-110050800	Weak transcription	Ovary	ovary
26	chr9:110048600-110050800	Weak transcription	Right Atrium	heart
27	chr9:110048600-110051400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:110048600-110051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:110048600-110052000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:110048600-110052000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:110048600-110052000	Active TSS	GM12878-XiMat	blood
32	chr9:110048600-110052200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr9:110048600-110058000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr9:110048800-110051400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr9:110048800-110051400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:110048800-110051800	Weak transcription	Brain Substantia Nigra	brain
37	chr9:110048800-110051800	Weak transcription	Fetal Lung	lung
38	chr9:110048800-110052000	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:110048800-110052000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:110048800-110052200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr9:110048800-110052600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:110048800-110052600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr9:110048800-110052800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr9:110048800-110055000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:110048800-110055200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:110048800-110055200	Weak transcription	HSMMtube	muscle
47	chr9:110048800-110056800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr9:110048800-110058600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr9:110048800-110059200	Enhancers	HepG2	liver
50	chr9:110048800-110061000	Enhancers	Primary T helper cells fromperipheralblood	blood

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