Variant report

Variant	rs147348518
Chromosome Location	chr4:6925485-6925486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6924422..6927283-chr4:6930396..6933115,3	K562	blood:
2	chr4:6917201..6921579-chr4:6924492..6930074,6	MCF-7	breast:
3	chr4:6909963..6912664-chr4:6925024..6930247,5	MCF-7	breast:
4	chr4:6925139..6926793-chr4:6927424..6929653,2	K562	blood:
5	chr4:6918829..6920609-chr4:6923833..6926676,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3400936	chr4:6925101-6927799	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6919000-6928000	Weak transcription	Fetal Kidney	kidney
2	chr4:6919600-6925600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:6919600-6942200	Weak transcription	Hela-S3	cervix
4	chr4:6920200-6927600	Weak transcription	Right Atrium	heart
5	chr4:6920200-6939600	Weak transcription	HUVEC	blood vessel
6	chr4:6920400-6928600	Weak transcription	Psoas Muscle	Psoas
7	chr4:6920400-6931000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:6921000-6925600	Weak transcription	Fetal Lung	lung
9	chr4:6921400-6925600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:6922400-6925600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:6922400-6927400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:6923200-6930800	Weak transcription	Stomach Mucosa	stomach
13	chr4:6923600-6925800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr4:6923800-6925600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr4:6923800-6926000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr4:6923800-6926400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr4:6923800-6927000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:6923800-6927200	Strong transcription	Thymus	Thymus
19	chr4:6924200-6927000	Strong transcription	Primary T cells from cord blood	blood
20	chr4:6924200-6927800	Strong transcription	Fetal Intestine Small	intestine
21	chr4:6924400-6927200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:6924400-6930600	Weak transcription	Fetal Brain Male	brain
23	chr4:6924600-6925600	Strong transcription	HepG2	liver
24	chr4:6924600-6926400	Strong transcription	Fetal Thymus	thymus
25	chr4:6924600-6927000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr4:6924600-6928600	Weak transcription	Osteobl	bone
27	chr4:6924600-6929000	Strong transcription	Fetal Stomach	stomach
28	chr4:6924800-6925600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr4:6924800-6926400	Strong transcription	K562	blood
30	chr4:6924800-6926600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:6924800-6926600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr4:6924800-6928000	Genic enhancers	Primary T cells fromperipheralblood	blood
33	chr4:6924800-6928200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:6924800-6928400	Strong transcription	Stomach Smooth Muscle	stomach
35	chr4:6925000-6925600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr4:6925000-6925600	Strong transcription	Brain Hippocampus Middle	brain
37	chr4:6925000-6925600	Strong transcription	Esophagus	oesophagus
38	chr4:6925000-6925600	ZNF genes & repeats	Fetal Intestine Large	intestine
39	chr4:6925000-6926000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr4:6925000-6926200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:6925000-6926400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:6925000-6926600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:6925000-6926600	Strong transcription	Primary B cells from cord blood	blood
44	chr4:6925000-6926600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr4:6925000-6926600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
46	chr4:6925000-6926600	Genic enhancers	Liver	Liver
47	chr4:6925000-6926600	Strong transcription	Brain Substantia Nigra	brain
48	chr4:6925000-6926800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:6925000-6927000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr4:6925000-6927200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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