Variant report

Variant	rs147369106
Chromosome Location	chr3:52582695-52582696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52579491..52583913-chr3:52584069..52587223,6	K562	blood:
2	chr3:52582290..52585059-chr3:52585315..52587211,2	MCF-7	breast:
3	chr3:52569665..52571812-chr3:52580710..52583139,2	K562	blood:
4	chr3:52570313..52572775-chr3:52580397..52583533,3	MCF-7	breast:
5	chr3:52578493..52580735-chr3:52582072..52584660,3	K562	blood:

Variant related genes	Relation type
ENSG00000168273	Chromatin interaction
ENSG00000252768	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876793	chr3:52450043-52584787	Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv822091	chr3:52582073-52587321	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52571400-52594200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:52572200-52584400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:52572400-52594200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:52572400-52633000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:52573200-52583400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:52573200-52585000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:52573200-52586400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:52573200-52589600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:52573200-52590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:52573400-52585200	Weak transcription	Small Intestine	intestine
11	chr3:52573400-52595000	Weak transcription	Stomach Mucosa	stomach
12	chr3:52573600-52583200	Weak transcription	Colonic Mucosa	Colon
13	chr3:52573600-52598400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:52573800-52584600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:52574200-52583200	Weak transcription	Spleen	Spleen
16	chr3:52574200-52588400	Strong transcription	Liver	Liver
17	chr3:52574400-52623800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr3:52574600-52594200	Weak transcription	K562	blood
19	chr3:52574600-52598800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:52574800-52605000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:52575600-52585200	Weak transcription	Brain Angular Gyrus	brain
22	chr3:52575800-52584400	Weak transcription	Hela-S3	cervix
23	chr3:52576000-52590400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:52576200-52583200	Weak transcription	Lung	lung
25	chr3:52576200-52583600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:52576200-52583600	Weak transcription	Gastric	stomach
27	chr3:52576200-52584400	Weak transcription	Right Ventricle	heart
28	chr3:52576800-52625600	Strong transcription	Fetal Thymus	thymus
29	chr3:52577000-52599000	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:52577200-52599000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:52577600-52584400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:52577600-52595400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:52577600-52598600	Strong transcription	Placenta	Placenta
34	chr3:52577600-52605200	Strong transcription	Dnd41	blood
35	chr3:52578000-52595400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:52578200-52591200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:52578200-52625600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr3:52578400-52588800	Strong transcription	NH-A	brain
39	chr3:52578400-52598600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:52578400-52600600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:52578600-52587000	Strong transcription	Brain Germinal Matrix	brain
42	chr3:52578800-52598200	Strong transcription	Primary B cells from cord blood	blood
43	chr3:52578800-52598800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr3:52578800-52599600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr3:52578800-52601400	Strong transcription	Primary B cells from peripheral blood	blood
46	chr3:52579000-52583000	Strong transcription	Fetal Lung	lung
47	chr3:52579000-52585400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:52579000-52598600	Strong transcription	Thymus	Thymus
49	chr3:52579000-52599200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:52579200-52598200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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