Variant report

Variant	rs147411609
Chromosome Location	chr3:139000884-139000885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138993561..138997338-chr3:139000852..139004803,5	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591856	chr3:139000844-139037832	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138999000-139006800	Weak transcription	Pancreas	Pancrea
2	chr3:138999200-139001800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:138999400-139001000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:138999800-139001000	Enhancers	Osteobl	bone
5	chr3:138999800-139001200	Flanking Active TSS	Brain Cingulate Gyrus	brain
6	chr3:139000000-139001200	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr3:139000000-139001600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:139000000-139001800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:139000200-139001000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr3:139000200-139001000	Active TSS	Brain Angular Gyrus	brain
11	chr3:139000400-139001000	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr3:139000400-139001200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:139000400-139001200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:139000400-139001400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr3:139000400-139001400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:139000600-139001000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:139000600-139001000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:139000600-139001000	Bivalent Enhancer	Placenta	Placenta
19	chr3:139000600-139001200	Enhancers	Right Ventricle	heart
20	chr3:139000600-139001200	Flanking Active TSS	HSMM	muscle
21	chr3:139000600-139001400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr3:139000600-139001600	Enhancers	Left Ventricle	heart
23	chr3:139000600-139003000	Flanking Active TSS	NHDF-Ad	bronchial
24	chr3:139000800-139001000	Active TSS	Brain Substantia Nigra	brain
25	chr3:139000800-139001000	Enhancers	HSMMtube	muscle
26	chr3:139000800-139001200	Enhancers	Ovary	ovary
27	chr3:139000800-139001400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr3:139000800-139002600	Enhancers	K562	blood
29	chr3:139000800-139004400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:139000800-139011200	Weak transcription	NHLF	lung

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