Variant report

Variant	rs147436460
Chromosome Location	chr6:161412400-161412401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr6:161412373-161413442	HCT-116	colon:	n/a	n/a
2	POLR2A	chr6:161412117-161414075	K562	blood:	n/a	n/a
3	YY1	chr6:161412216-161413298	SK-N-SH_RA	brain:	n/a	chr6:161412862-161412871 chr6:161412827-161412836 chr6:161412815-161412834 chr6:161412814-161412834 chr6:161412810-161412832 chr6:161412823-161412831 chr6:161413244-161413255 chr6:161412934-161412943 chr6:161412821-161412829 chr6:161412822-161412832 chr6:161412820-161412832
4	MAX	chr6:161412165-161414129	NB4	blood:	n/a	chr6:161412941-161412950
5	MYC	chr6:161411801-161414241	K562	blood:	n/a	chr6:161412941-161412950
6	YY1	chr6:161412334-161413475	ECC-1	luminal epithelium:	n/a	chr6:161412862-161412871 chr6:161412827-161412836 chr6:161412815-161412834 chr6:161413424-161413435 chr6:161412814-161412834 chr6:161412810-161412832 chr6:161412823-161412831 chr6:161413244-161413255 chr6:161412934-161412943 chr6:161412821-161412829 chr6:161412822-161412832 chr6:161412820-161412832
7	CHD2	chr6:161412310-161412578	H1-hESC	embryonic stem cell:	n/a	n/a
8	JUND	chr6:161412320-161412924	H1-hESC	embryonic stem cell:	n/a	chr6:161412491-161412500
9	POLR2A	chr6:161412207-161413801	H1-neurons	neurons:	n/a	n/a
10	POLR2A	chr6:161412171-161413856	GM12892	blood:	n/a	n/a
11	MXI1	chr6:161412255-161414082	HepG2	liver:	n/a	n/a
12	POLR2A	chr6:161412385-161413001	H1-hESC	embryonic stem cell:	n/a	n/a
13	YY1	chr6:161412234-161413563	HepG2	liver:	n/a	chr6:161412862-161412871 chr6:161412827-161412836 chr6:161412815-161412834 chr6:161413424-161413435 chr6:161412814-161412834 chr6:161412810-161412832 chr6:161412823-161412831 chr6:161413244-161413255 chr6:161412934-161412943 chr6:161412821-161412829 chr6:161412822-161412832 chr6:161412820-161412832
14	POLR2A	chr6:161412225-161413657	Gliobla	brain:	n/a	n/a
15	CREB1	chr6:161412151-161413649	HepG2	liver:	n/a	n/a
16	CTCF	chr6:161412346-161412902	K562	blood:	n/a	chr6:161412601-161412614 chr6:161412604-161412617
17	POLR2A	chr6:161412220-161413678	H1-neurons	neurons:	n/a	n/a
18	REST	chr6:161412272-161413006	HepG2	liver:	n/a	chr6:161412576-161412589
19	POLR2A	chr6:161412277-161413564	ECC-1	luminal epithelium:	n/a	n/a
20	MAX	chr6:161412369-161413166	H1-hESC	embryonic stem cell:	n/a	chr6:161412941-161412950
21	HEY1	chr6:161412332-161413005	HepG2	liver:	n/a	n/a
22	HDAC2	chr6:161412380-161412979	HepG2	liver:	n/a	n/a
23	TAF1	chr6:161412300-161413561	H1-hESC	embryonic stem cell:	n/a	n/a
24	GTF2F1	chr6:161412363-161412948	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr6:161412201-161413756	GM12892	blood:	n/a	n/a
26	ELF1	chr6:161412252-161412914	K562	blood:	n/a	chr6:161412862-161412871
27	RCOR1	chr6:161412197-161413493	HepG2	liver:	n/a	n/a
28	TAF1	chr6:161412199-161413601	K562	blood:	n/a	n/a
29	MAX	chr6:161412279-161413808	ECC-1	luminal epithelium:	n/a	chr6:161412941-161412950
30	UBTF	chr6:161412133-161414134	K562	blood:	n/a	n/a
31	POLR2A	chr6:161412119-161413702	U87	brain:	n/a	n/a
32	EP300	chr6:161412322-161413482	ECC-1	luminal epithelium:	n/a	chr6:161413396-161413412
33	ARID3A	chr6:161412215-161412877	HepG2	liver:	n/a	n/a
34	POLR2A	chr6:161412189-161414076	K562	blood:	n/a	n/a
35	RUNX3	chr6:161412244-161412994	GM12878	blood:	n/a	n/a
36	ZMIZ1	chr6:161412256-161414163	K562	blood:	n/a	n/a
37	POLR2A	chr6:161412326-161413039	H1-hESC	embryonic stem cell:	n/a	n/a
38	ETS1	chr6:161412308-161413388	K562	blood:	n/a	chr6:161412860-161412871
39	POLR2A	chr6:161412227-161413036	U87	brain:	n/a	n/a
40	MTA3	chr6:161412116-161413063	GM12878	blood:	n/a	n/a
41	REST	chr6:161412064-161413919	H1-neurons	neurons:	n/a	chr6:161412576-161412589
42	POLR2A	chr6:161412205-161414049	Hela-S3	cervix:	n/a	n/a
43	TAF1	chr6:161412300-161413553	HepG2	liver:	n/a	n/a
44	POLR2A	chr6:161412190-161414012	PBDE	blood:	n/a	n/a
45	POLR2A	chr6:161412306-161413504	HL-60	blood:	n/a	n/a
46	MAX	chr6:161412359-161413666	GM12878	blood:	n/a	chr6:161412941-161412950
47	TAF7	chr6:161412215-161413624	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr6:161411570-161414072	MCF10A-Er-Src	breast:	n/a	n/a
49	POLR2A	chr6:161412183-161413017	PANC-1	pancreas:	n/a	n/a
50	MAZ	chr6:161411982-161414175	K562	blood:	n/a	chr6:161412941-161412950

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:161412392-161412442	A549	lung:	n/a
2	chr6:161412392-161412442	HCF	heart:	n/a
3	chr6:161412392-161412442	HEEpiC	esophagus:	n/a
4	chr6:161412392-161412442	HIPEpiC	eye:	n/a
5	chr6:161412392-161412442	SKMC	muscle:	n/a
6	chr6:161412392-161412442	GM12892	blood:	n/a
7	chr6:161412392-161412442	AG10803	skin:	n/a
8	chr6:161412392-161412442	ovcar-3	ovarian:	n/a
9	chr6:161412392-161412442	GM12878	blood:	n/a
10	chr6:161412392-161412442	HEK293	kidney:	embryo
11	chr6:161412392-161412442	NHDF-neo	bronchial:	n/a
12	chr6:161412392-161412442	GM12891	blood:	n/a
13	chr6:161412392-161412442	HCT-116	colon:	n/a
14	chr6:161412392-161412442	NHBE	bronchial:	n/a
15	chr6:161412392-161412442	K562	blood:	n/a
16	chr6:161412392-161412442	CMK	blood:	n/a
17	chr6:161412392-161412442	GM06990	blood:	n/a
18	chr6:161412392-161412442	HAEpiC	amniotic membrane:	n/a
19	chr6:161412392-161412442	HUVEC	blood vessel:	n/a
20	chr6:161412392-161412442	SK-N-MC	brain:	n/a
21	chr6:161412392-161412442	BJ	skin:	n/a
22	chr6:161412392-161412442	NB4	blood:	n/a
23	chr6:161412392-161412442	HepG2	liver:	n/a
24	chr6:161412392-161412442	HNPCEpiC	eye:	n/a
25	chr6:161412392-161412442	PFSK-1	brain:	n/a
26	chr6:161412392-161412442	SK-N-SH	brain:	n/a
27	chr6:161412392-161412442	Hela-S3	cervix:	n/a
28	chr6:161412392-161412442	PANC-1	pancreas:	n/a
29	chr6:161412392-161412442	T-47D	breast:	n/a
30	chr6:161412392-161412442	PrEC	prostate:	n/a
31	chr6:161412392-161412442	SK-N-SH_RA	brain:	n/a
32	chr6:161412392-161412442	AoSMC	blood vessel:	n/a
33	chr6:161412392-161412442	NH-A	brain:	n/a
34	chr6:161412392-161412442	NT2-D1	testis:	n/a
35	chr6:161412392-161412442	ECC-1	luminal epithelium:	n/a
36	chr6:161412392-161412442	AG04450	lung:	fetal
37	chr6:161412392-161412442	H1-hESC	embryonic stem cell:	embryo
38	chr6:161412392-161412442	AG09319	gingival:	n/a
39	chr6:161412392-161412442	U87	brain:	n/a
40	chr6:161412392-161412442	HRE	kidney:	n/a
41	chr6:161412392-161412442	ProgFib	skin:	n/a
42	chr6:161412392-161412442	Jurkat	blood:	n/a
43	chr6:161412392-161412442	HRCEpiC	kidney:	n/a
44	chr6:161412392-161412442	HCM	heart:	n/a
45	chr6:161412392-161412442	BE2_C	brain:	n/a
46	chr6:161412392-161412442	HCPEpiC	choroid plexus:	n/a
47	chr6:161412392-161412442	HPAEpiC	pulmonary alveolar:	n/a
48	chr6:161412392-161412442	LNCaP	prostate:	n/a
49	chr6:161412392-161412442	MCF-7	breast:	n/a
50	chr6:161412392-161412442	AG09309	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:158243442..158245618-chr6:161412032..161413556,2	K562	blood:
2	chr6:161411531..161413327-chr6:161653025..161655728,2	K562	blood:
3	chr6:161409929..161412719-chr6:161465318..161467396,2	K562	blood:
4	chr6:161411809..161413437-chr6:161693885..161696604,2	K562	blood:
5	chr6:161411372..161413087-chr6:161442452..161444110,2	K562	blood:
6	chr6:161349966..161354183-chr6:161410810..161413824,4	MCF-7	breast:
7	chr6:161300742..161302528-chr6:161411919..161413550,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AGPAT4-1	chr6:161411382-161412758	NONHSAT115928
2	lnc-AGPAT4-1	chr6:161411350-161413374	ENSG00000272841.1

Variant related genes	Relation type
MAP3K4	TF binding region
MAP3K4	CpG island
ENSG00000224371	Chromatin interaction
ENSG00000026652	Chromatin interaction
ENSG00000231863	Chromatin interaction
ENSG00000130340	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv3357609	chr6:161411812-161414260	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3427182	chr6:161411987-161414535	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:154 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161411200-161414000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:161411200-161414600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:161411600-161412400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:161411600-161412600	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr6:161411600-161414000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:161411600-161414200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:161411600-161414400	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:161411800-161412400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:161411800-161412400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:161411800-161412600	Active TSS	Fetal Brain Male	brain
11	chr6:161411800-161413400	Active TSS	Fetal Lung	lung
12	chr6:161411800-161414000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:161411800-161414000	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:161411800-161414000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:161411800-161414000	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:161411800-161414000	Active TSS	Brain Cingulate Gyrus	brain
17	chr6:161411800-161414000	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:161411800-161414000	Active TSS	Brain Substantia Nigra	brain
19	chr6:161411800-161414000	Active TSS	Fetal Intestine Large	intestine
20	chr6:161411800-161414000	Active TSS	Fetal Muscle Leg	muscle
21	chr6:161411800-161414000	Active TSS	K562	blood
22	chr6:161411800-161414000	Active TSS	NHLF	lung
23	chr6:161411800-161414200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:161411800-161414200	Active TSS	Brain Angular Gyrus	brain
25	chr6:161411800-161414200	Active TSS	Fetal Kidney	kidney
26	chr6:161411800-161414200	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr6:161411800-161414200	Active TSS	Rectal Smooth Muscle	rectum
28	chr6:161411800-161414200	Active TSS	HSMMtube	muscle
29	chr6:161411800-161414400	Active TSS	H1 Cell Line	embryonic stem cell
30	chr6:161411800-161414400	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:161411800-161414400	Active TSS	HMEC	breast
32	chr6:161411800-161414400	Active TSS	NH-A	brain
33	chr6:161411800-161417800	Active TSS	GM12878-XiMat	blood
34	chr6:161412000-161412400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr6:161412000-161412400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr6:161412000-161412400	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr6:161412000-161412400	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr6:161412000-161412400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:161412000-161412400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr6:161412000-161412400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:161412000-161412400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr6:161412000-161412400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:161412000-161412400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr6:161412000-161412400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:161412000-161412400	Flanking Active TSS	Liver	Liver
46	chr6:161412000-161412400	Active TSS	Right Atrium	heart
47	chr6:161412000-161412400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr6:161412000-161412400	Active TSS	Stomach Mucosa	stomach
49	chr6:161412000-161412400	Flanking Bivalent TSS/Enh	Dnd41	blood
50	chr6:161412000-161412400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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