Variant report

Variant	rs147438477
Chromosome Location	chr6:34729037-34729038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34727618..34732287-chr6:34732833..34737608,8	K562	blood:
2	chr6:34713112..34714744-chr6:34728866..34731406,2	K562	blood:
3	chr6:34723754..34729214-chr6:34758122..34762652,9	MCF-7	breast:
4	chr6:34671316..34674801-chr6:34727062..34730590,3	K562	blood:
5	chr6:34726193..34732287-chr6:34732320..34736678,10	K562	blood:

Variant related genes	Relation type
ENSG00000065060	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34725800-34729600	Weak transcription	Aorta	Aorta
2	chr6:34726000-34729200	Weak transcription	Ovary	ovary
3	chr6:34726000-34730400	Weak transcription	Psoas Muscle	Psoas
4	chr6:34726000-34731000	Weak transcription	Gastric	stomach
5	chr6:34726000-34747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:34726000-34750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:34726200-34729400	Weak transcription	Right Atrium	heart
8	chr6:34726200-34729600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:34726200-34729600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:34726200-34729600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:34726200-34729800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:34726200-34729800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:34726200-34729800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:34726200-34729800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:34726200-34729800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:34726200-34729800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:34726200-34729800	Weak transcription	Thymus	Thymus
18	chr6:34726200-34729800	Weak transcription	HSMMtube	muscle
19	chr6:34726200-34730000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:34726200-34730200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:34726200-34730200	Weak transcription	Brain Anterior Caudate	brain
22	chr6:34726200-34730400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:34726200-34730400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:34726200-34730400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:34726200-34730400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:34726200-34730400	Weak transcription	NHDF-Ad	bronchial
27	chr6:34726200-34732600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:34726200-34732800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:34726200-34732800	Weak transcription	NH-A	brain
30	chr6:34726200-34733400	Weak transcription	Left Ventricle	heart
31	chr6:34726200-34734200	Weak transcription	Esophagus	oesophagus
32	chr6:34726200-34734400	Weak transcription	Brain Angular Gyrus	brain
33	chr6:34726200-34734400	Weak transcription	Colonic Mucosa	Colon
34	chr6:34726200-34736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:34726200-34738000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:34726200-34739600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:34726400-34729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:34726400-34729600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:34726400-34729600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:34726400-34729600	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:34726400-34729600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:34726400-34729600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:34726400-34729800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:34726400-34729800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:34726400-34730400	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:34726400-34730400	Weak transcription	Brain Substantia Nigra	brain
47	chr6:34726400-34730400	Weak transcription	Small Intestine	intestine
48	chr6:34726400-34730400	Weak transcription	HSMM	muscle
49	chr6:34726400-34730600	Weak transcription	HMEC	breast
50	chr6:34726400-34731800	Weak transcription	Spleen	Spleen

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