Variant report

Variant	rs1474412
Chromosome Location	chr8:102587259-102587260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102585772..102587387-chr8:102587401..102588904,2	MCF-7	breast:
2	chr8:102576536..102580094-chr8:102585816..102588883,4	MCF-7	breast:
3	chr8:102586663..102588864-chr8:102589452..102591832,2	MCF-7	breast:
4	chr8:102502163..102508014-chr8:102585350..102588773,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10955258	0.80[EUR][1000 genomes]
rs11787301	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs2507796	0.82[EUR][1000 genomes]
rs529323	0.83[EUR][1000 genomes]
rs547820	0.82[EUR][1000 genomes]
rs548564	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs608799	0.81[EUR][1000 genomes]
rs612357	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891230	chr8:102569309-102604306	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102571000-102589600	Weak transcription	Gastric	stomach
3	chr8:102576000-102589600	Weak transcription	HMEC	breast
4	chr8:102582200-102592400	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:102583400-102588200	Weak transcription	Ovary	ovary
6	chr8:102583800-102596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:102585000-102588800	Enhancers	Fetal Intestine Large	intestine
8	chr8:102585200-102588000	Enhancers	Fetal Intestine Small	intestine
9	chr8:102585200-102590400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:102585600-102587400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:102585600-102587400	Enhancers	Fetal Muscle Leg	muscle
12	chr8:102585600-102587400	Enhancers	Pancreas	Pancrea
13	chr8:102585600-102589000	Enhancers	A549	lung
14	chr8:102585600-102595800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:102585800-102587400	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr8:102585800-102587400	Enhancers	Colon Smooth Muscle	Colon
17	chr8:102585800-102587600	Enhancers	Fetal Brain Male	brain
18	chr8:102585800-102589000	Enhancers	Fetal Heart	heart
19	chr8:102585800-102589000	Enhancers	Stomach Mucosa	stomach
20	chr8:102585800-102589000	Genic enhancers	NHEK	skin
21	chr8:102585800-102592200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:102586000-102587600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr8:102586000-102589000	Enhancers	Fetal Brain Female	brain
24	chr8:102586200-102588400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:102586200-102588800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:102586400-102587400	Enhancers	Left Ventricle	heart
27	chr8:102586600-102587400	Enhancers	Esophagus	oesophagus
28	chr8:102586600-102587600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:102586600-102588800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:102586800-102587400	Enhancers	Fetal Thymus	thymus
31	chr8:102586800-102587400	Enhancers	Lung	lung
32	chr8:102587000-102588000	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr8:102587000-102588200	Enhancers	Placenta Amnion	Placenta Amnion
34	chr8:102587000-102588200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr8:102587000-102588400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:102587000-102588400	Enhancers	Rectal Smooth Muscle	rectum
37	chr8:102587000-102588800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:102587000-102589000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:102587000-102589400	Weak transcription	Placenta	Placenta
40	chr8:102587000-102589600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:102587000-102589600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr8:102587000-102589600	Weak transcription	Right Atrium	heart
43	chr8:102587000-102589600	Weak transcription	Right Ventricle	heart
44	chr8:102587000-102589600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr8:102587000-102590000	Weak transcription	Brain Angular Gyrus	brain
46	chr8:102587000-102590200	Weak transcription	Liver	Liver
47	chr8:102587000-102590200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr8:102587000-102594600	Weak transcription	Fetal Stomach	stomach
49	chr8:102587000-102597000	Weak transcription	Colonic Mucosa	Colon
50	chr8:102587200-102587400	Flanking Active TSS	Duodenum Mucosa	Duodenum

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