Variant report

Variant	rs147442853
Chromosome Location	chr8:127836432-127836433
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127834592..127842945-chr8:128745185..128752445,14	MCF-7	breast:
2	chr8:127836311..127837281-chr8:127888680..127889401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction
ENSG00000249375	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891438	chr8:127670339-127845702	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1851585	chr8:127836077-127838244	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1846092	chr8:127836077-127838825	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1848524	chr8:127836277-127838744	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3380744	chr8:127836411-127836579	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127827000-127837200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:127832000-127836600	Enhancers	Osteobl	bone
3	chr8:127832600-127836600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:127832600-127836600	Weak transcription	Fetal Lung	lung
5	chr8:127833200-127837000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:127833600-127836800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:127833600-127839800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:127833800-127836600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:127833800-127837000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:127833800-127837000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:127834000-127836800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:127834200-127836800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:127836200-127836800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:127836400-127836600	Enhancers	A549	lung
15	chr8:127836400-127836600	Enhancers	Hela-S3	cervix
16	chr8:127836400-127836800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:127836400-127836800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:127836400-127836800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:127836400-127836800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:127836400-127836800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:127836400-127836800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:127836400-127836800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr8:127836400-127836800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:127836400-127836800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:127836400-127836800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:127836400-127836800	Enhancers	Fetal Muscle Leg	muscle
27	chr8:127836400-127836800	Enhancers	HSMMtube	muscle
28	chr8:127836400-127836800	Enhancers	HUVEC	blood vessel
29	chr8:127836400-127836800	Enhancers	NH-A	brain
30	chr8:127836400-127836800	Flanking Active TSS	NHDF-Ad	bronchial
31	chr8:127836400-127836800	Enhancers	NHEK	skin
32	chr8:127836400-127837000	Enhancers	Fetal Heart	heart
33	chr8:127836400-127837000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr8:127836400-127837000	Active TSS	K562	blood
35	chr8:127836400-127837000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links