Variant report

Variant	rs1475100
Chromosome Location	chr1:186232266-186232267
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10911840	0.87[EUR][1000 genomes]
rs1285114	0.87[EUR][1000 genomes]
rs1285115	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1285116	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1285117	0.86[EUR][1000 genomes]
rs1285119	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1293986	0.84[EUR][1000 genomes]
rs1998347	0.83[EUR][1000 genomes]
rs4651306	0.80[AFR][1000 genomes]
rs6671112	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs704308	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs716288	0.80[AFR][1000 genomes]
rs857582	0.87[EUR][1000 genomes]
rs857584	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186232200-186232400	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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