Variant report

Variant	rs1475345
Chromosome Location	chr6:11230402-11230403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11205282..11206878-chr6:11230200..11231972,2	MCF-7	breast:
2	chr6:11144154..11146594-chr6:11228087..11231091,3	MCF-7	breast:
3	chr6:11230377..11232142-chr6:11422204..11424608,2	MCF-7	breast:
4	chr6:11206157..11210739-chr6:11227507..11231085,4	MCF-7	breast:
5	chr6:11209074..11211031-chr6:11228787..11231392,2	MCF-7	breast:
6	chr6:11230046..11231611-chr6:11426271..11428690,2	MCF-7	breast:
7	chr6:11172565..11174594-chr6:11228822..11230575,2	MCF-7	breast:
8	chr6:11229014..11231620-chr6:11494391..11496101,2	MCF-7	breast:
9	chr6:11229690..11234119-chr6:11380884..11384431,5	MCF-7	breast:
10	chr6:11229128..11232149-chr6:11433876..11436826,3	MCF-7	breast:
11	chr6:11227854..11232586-chr6:11280753..11285913,6	MCF-7	breast:
12	chr6:11217430..11219520-chr6:11228784..11230869,3	MCF-7	breast:
13	chr6:11228618..11230806-chr6:11414420..11416664,2	MCF-7	breast:
14	chr6:11229798..11231566-chr6:11239902..11241851,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000247925	Chromatin interaction
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11970705	0.82[LWK][hapmap]
rs9295828	0.86[CHB][hapmap];0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1475345	NOL7	cis	cerebellum	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11215400-11232000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11216600-11231800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:11220000-11230800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:11223200-11230600	Transcr. at gene 5' and 3'	HepG2	liver
5	chr6:11223400-11232000	Weak transcription	Pancreas	Pancrea
6	chr6:11225200-11231600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:11225200-11232200	Weak transcription	Gastric	stomach
8	chr6:11225400-11232200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:11225600-11230600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:11225600-11231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:11225800-11230600	Weak transcription	Primary T cells from cord blood	blood
12	chr6:11225800-11231800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:11226200-11230800	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
14	chr6:11226200-11233600	Active TSS	Psoas Muscle	Psoas
15	chr6:11226400-11230600	Weak transcription	Primary B cells from cord blood	blood
16	chr6:11226400-11230600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:11226400-11232600	Weak transcription	Spleen	Spleen
18	chr6:11226600-11233400	Active TSS	Right Atrium	heart
19	chr6:11227400-11231800	Active TSS	Rectal Smooth Muscle	rectum
20	chr6:11227400-11231800	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:11227400-11233400	Active TSS	Left Ventricle	heart
22	chr6:11227600-11233600	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:11228000-11230600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:11228000-11233400	Active TSS	Right Ventricle	heart
25	chr6:11228000-11233600	Active TSS	Lung	lung
26	chr6:11228800-11230800	Transcr. at gene 5' and 3'	A549	lung
27	chr6:11228800-11231800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:11228800-11231800	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:11228800-11232000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:11228800-11233400	Active TSS	Brain Anterior Caudate	brain
31	chr6:11228800-11233600	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr6:11229000-11231400	Flanking Active TSS	HUVEC	blood vessel
33	chr6:11229000-11233200	Active TSS	Fetal Brain Female	brain
34	chr6:11229000-11233600	Active TSS	Colonic Mucosa	Colon
35	chr6:11229000-11233600	Active TSS	Fetal Stomach	stomach
36	chr6:11229000-11233600	Active TSS	NHLF	lung
37	chr6:11229000-11234200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:11229200-11230600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:11229200-11231600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr6:11229200-11231600	Flanking Active TSS	Fetal Intestine Large	intestine
41	chr6:11229200-11231800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:11229200-11232000	Flanking Active TSS	NHEK	skin
43	chr6:11229200-11232200	Active TSS	Fetal Muscle Leg	muscle
44	chr6:11229200-11233400	Active TSS	Brain Angular Gyrus	brain
45	chr6:11229200-11233400	Active TSS	Brain Hippocampus Middle	brain
46	chr6:11229200-11233400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr6:11229200-11233400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:11229200-11233600	Active TSS	Aorta	Aorta
49	chr6:11229400-11230800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:11229400-11230800	Flanking Active TSS	Osteobl	bone

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