Variant report

Variant	rs147538789
Chromosome Location	chr2:97427012-97427013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:97300473..97305040-chr2:97425563..97430425,4	MCF-7	breast:
2	chr2:96990031..96992678-chr2:97425792..97428161,2	K562	blood:
3	chr2:97399050..97401934-chr2:97425434..97428071,2	MCF-7	breast:
4	chr2:97268720..97275117-chr2:97424272..97429412,8	MCF-7	breast:
5	chr2:97404813..97407675-chr2:97425727..97428415,3	K562	blood:
6	chr14:20923224..20923843-chr2:97426397..97427093,2	Hela-S3	cervix:
7	chr2:97426745..97429493-chr2:97493340..97495541,2	K562	blood:
8	chr2:97425678..97429518-chr2:97479689..97484495,7	MCF-7	breast:
9	chr2:97425294..97427081-chr2:97533526..97535772,2	K562	blood:
10	chr2:97299733..97305587-chr2:97425305..97429139,7	K562	blood:
11	chr2:97426655..97429624-chr2:97455358..97458056,3	MCF-7	breast:
12	chr2:97426251..97427245-chr3:20227662..20228331,2	Hela-S3	cervix:
13	chr2:97426686..97428593-chr2:97451659..97454147,2	MCF-7	breast:
14	chr2:97299733..97305587-chr2:97422203..97428186,8	K562	blood:
15	chr2:97426212..97427746-chr2:97532479..97534253,2	MCF-7	breast:
16	chr2:97426031..97428759-chr2:97617125..97619977,2	MCF-7	breast:
17	chr2:97426951..97430743-chr2:97481056..97485164,3	K562	blood:
18	chr2:97403401..97407119-chr2:97425023..97428100,7	MCF-7	breast:
19	chr2:97402906..97407899-chr2:97425229..97430147,10	MCF-7	breast:
20	chr11:808341..811136-chr2:97426419..97428883,2	K562	blood:
21	chr19:59057645..59060088-chr2:97425289..97427469,2	MCF-7	breast:
22	chr2:97426560..97429669-chr2:97487357..97491316,3	MCF-7	breast:
23	chr2:97405153..97407675-chr2:97425109..97427390,3	K562	blood:
24	chr2:97301517..97305285-chr2:97426115..97429843,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168754	Chromatin interaction
ENSG00000177595	Chromatin interaction
ENSG00000130726	Chromatin interaction
ENSG00000092094	Chromatin interaction
ENSG00000114982	Chromatin interaction
ENSG00000198885	Chromatin interaction
ENSG00000100823	Chromatin interaction
ENSG00000168763	Chromatin interaction
ENSG00000129810	Chromatin interaction
ENSG00000114988	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000177600	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	esv3460902	chr2:97138421-97459342	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	esv3460903	chr2:97138421-97459342	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv874680	chr2:97309574-97678319	Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv834307	chr2:97321447-97479266	Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv526313	chr2:97333492-97660619	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
12	nsv874681	chr2:97410949-97577343	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	nsv874682	chr2:97423626-97567389	Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv3438902	chr2:97425450-97427998	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
15	esv3445643	chr2:97425775-97427773	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97426000-97427200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr2:97426000-97427200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:97426000-97427200	Active TSS	Brain Angular Gyrus	brain
4	chr2:97426000-97427200	Active TSS	Brain Hippocampus Middle	brain
5	chr2:97426000-97427200	Active TSS	Brain Substantia Nigra	brain
6	chr2:97426000-97427200	Active TSS	Fetal Brain Female	brain
7	chr2:97426000-97427200	Active TSS	Ovary	ovary
8	chr2:97426000-97427200	Active TSS	Psoas Muscle	Psoas
9	chr2:97426000-97427400	Active TSS	Fetal Kidney	kidney
10	chr2:97426000-97427600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:97426200-97427200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:97426200-97427200	Active TSS	Gastric	stomach
13	chr2:97426200-97427200	Active TSS	Left Ventricle	heart
14	chr2:97426200-97427200	Active TSS	Rectal Smooth Muscle	rectum
15	chr2:97426200-97427400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:97426200-97427400	Active TSS	Aorta	Aorta
17	chr2:97426200-97427400	Active TSS	Colon Smooth Muscle	Colon
18	chr2:97426200-97427400	Active TSS	Small Intestine	intestine
19	chr2:97426200-97428000	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr2:97426200-97430400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr2:97426400-97427200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr2:97426400-97427200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:97426400-97427200	Active TSS	Fetal Intestine Small	intestine
24	chr2:97426400-97427200	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr2:97426400-97427200	Active TSS	Stomach Mucosa	stomach
26	chr2:97426400-97427200	Active TSS	NHDF-Ad	bronchial
27	chr2:97426400-97427200	Active TSS	Osteobl	bone
28	chr2:97426400-97427400	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr2:97426400-97427400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:97426400-97427400	Active TSS	Fetal Intestine Large	intestine
31	chr2:97426400-97429800	Active TSS	HSMMtube	muscle
32	chr2:97426800-97427200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:97426800-97427200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr2:97426800-97427200	Flanking Active TSS	Colonic Mucosa	Colon
35	chr2:97426800-97427200	Active TSS	Placenta Amnion	Placenta Amnion
36	chr2:97426800-97427400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr2:97426800-97427400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr2:97426800-97427400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:97426800-97427400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr2:97426800-97427400	Flanking Active TSS	Fetal Thymus	thymus
41	chr2:97426800-97427400	Flanking Active TSS	NH-A	brain
42	chr2:97426800-97427600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr2:97426800-97427600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:97426800-97427600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr2:97426800-97427600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr2:97426800-97427600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:97426800-97427600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:97426800-97427600	Flanking Active TSS	Fetal Heart	heart
49	chr2:97426800-97427600	Flanking Active TSS	HMEC	breast
50	chr2:97426800-97427800	Flanking Active TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links