Variant report

Variant	rs1475465
Chromosome Location	chr13:29713820-29713821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1887747	0.81[ASN][1000 genomes]
rs7997492	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29711800-29714800	Active TSS	Right Ventricle	heart
2	chr13:29712400-29714400	Active TSS	Right Atrium	heart
3	chr13:29712600-29714600	Weak transcription	Liver	Liver
4	chr13:29712600-29715400	Weak transcription	Dnd41	blood
5	chr13:29712800-29715800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:29713000-29714400	Active TSS	Aorta	Aorta
7	chr13:29713200-29714600	Active TSS	Left Ventricle	heart
8	chr13:29713200-29715200	Enhancers	Rectal Smooth Muscle	rectum
9	chr13:29713800-29715000	Flanking Active TSS	Fetal Heart	heart
10	chr13:29713800-29715200	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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