The 2.0 version of rSNPBase

Variant report

Variant rs147565558
Chromosome Location chr4:54330689-54330690
allele -/TGT
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54270000-54330800 Weak transcription Brain Substantia Nigra brain
2 chr4:54292200-54331200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr4:54295200-54331600 Weak transcription Hela-S3 cervix
4 chr4:54295600-54339400 Weak transcription Fetal Brain Male brain
5 chr4:54316800-54332600 Weak transcription Esophagus oesophagus
6 chr4:54317200-54331400 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr4:54317400-54332600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr4:54320000-54332600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr4:54320000-54332600 Weak transcription Aorta Aorta
10 chr4:54320000-54332800 Weak transcription Fetal Stomach stomach
11 chr4:54320000-54342000 Weak transcription Pancreas Pancrea
12 chr4:54320000-54353200 Weak transcription Gastric stomach
13 chr4:54321000-54332600 Weak transcription H9 Cell Line embryonic stem cell
14 chr4:54321200-54331800 Weak transcription Ovary ovary
15 chr4:54321400-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr4:54321800-54330800 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr4:54321800-54339800 Weak transcription Placenta Amnion Placenta Amnion
18 chr4:54322000-54331200 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr4:54322200-54331400 Weak transcription Brain Anterior Caudate brain
20 chr4:54322200-54331600 Weak transcription HSMMtube muscle
21 chr4:54322800-54331200 Weak transcription Psoas Muscle Psoas
22 chr4:54326400-54331200 Weak transcription GM12878-XiMat blood
23 chr4:54326400-54332200 Weak transcription Fetal Intestine Small intestine
24 chr4:54326400-54332600 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr4:54327600-54347800 Weak transcription Fetal Muscle Trunk muscle
26 chr4:54327800-54331000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr4:54327800-54334600 Weak transcription NHLF lung
28 chr4:54327800-54335200 Weak transcription HMEC breast
29 chr4:54327800-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr4:54327800-54362200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr4:54328000-54330800 Weak transcription NHEK skin
32 chr4:54328000-54331200 Weak transcription Muscle Satellite Cultured Cells --
33 chr4:54328000-54332000 Weak transcription HUVEC blood vessel
34 chr4:54328000-54332400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr4:54328000-54332600 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr4:54328000-54332800 Weak transcription A549 lung
37 chr4:54328000-54339400 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr4:54328200-54332400 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr4:54328200-54362000 Weak transcription Brain Inferior Temporal Lobe brain
40 chr4:54328400-54333600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr4:54328400-54362000 Weak transcription Brain Angular Gyrus brain
42 chr4:54328600-54331200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr4:54328600-54331800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr4:54328600-54332600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr4:54328600-54332600 Weak transcription Fetal Muscle Leg muscle
46 chr4:54328600-54339600 Weak transcription Fetal Brain Female brain
47 chr4:54329200-54330800 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr4:54329200-54331400 Weak transcription ES-I3 Cell Line embryonic stem cell
49 chr4:54329200-54331400 Weak transcription Primary T cells fromperipheralblood blood
50 chr4:54329200-54332200 Weak transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015